Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00509 ATGAAGtcctttgaaaatatttatgatACCATTAACgtaagaaatcaaaatagtAACATGTTgggtttctctttctctcctcaAATGAATATAAGTGTTCCTTCCTTTGCTGCTGCTGCTACTGAAACAGTTCCAACAAGCTTTTATTATCACTCTACAGCTCTTCATAACTATGGCTTTTACTATGGACTTGAAGGTGAACATGTTGGATTGTATTCACCCTTGCCTATTAATATGCTTGATGGATCAACATATGGAATAGAAGCTCTCAGTAGATCACAACCACAAGCAATGGGAATCCCTCAATATGAATGTAATACCAAAGAAGCACTGCAAGTAAACATGGATAGTATTTTTTACAATCAAACTTCATGCCATAATAAACCAAACAATCCAAATAATGTAAGTGATGTACAAGAGAATACGAGTCTGTTGGAGAGTCTGAGGGAGCATCAGGAGCAACAAGTCTCGTATTACACCGTCTTAGGAAATCGTGATGTGATGTTAGAAGGGTCGATGAAAAATCAACTAAAAGATAGTGTCCAACTCCCAAATATAGTTGAAGATGAAGTTTATGATCTTAAGAGATGGATCCCAAGGGACATTCATGCTACTAGCCATGCACAAGAGTCAAAGTATGGGTTGTCCATGAGTCCTAGCTCACAATCAAGTTGTCTTACAAGTTCACAACAAACATCACTTATTGATTCTGTTTCCATTGATACAATGAAAAGTAAGCCTGCAATAGTGAAAAAGAATCAGAATCAATCCTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGATAACAGCTGTAAGAAAGAAGGACAAGctaggaaaggaaagcaagTTTATCTAGgAGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACTCGTATAAATTTTCCATTGGAAAATTATCAAAAGGAGCttgaagaaatgaagaaaatgaCTAGACAAGAATATGTTGCACATTTAAGaagGAAAAGCAGTGGATTCTCAAGAGGGGCTTCTATGTATAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCAcTACACAAGAAGAAGCAGGTGAAGCCTATGACATAGCTGCTATAAAATTCAGAGGAGCAAATGCTGTTACAAATTTTGATATAACAAAATATGATGTGGAAAAAATTATAGCAAGCAATAATCTTCTTAACAGTGAAGAAGCTAAGAGAAACAGAAAAATAGATGATGTAATTAACATTGAAGAAGCCATTAATCCAATGCAGAAGAGGTGCAAAATTCAATCATTTTCAATAGGTTTAGATGAAATATATAATCAAGAAGTAGAGGAATATTCAAATAGTGTGTTACATATATCAAATCCTTCTTCAATTGTGACAAGTTTGAGCAGCTCAAGAGAACAAAGCCCTGAAAACAGAACAAGCTTACCAATGCTGTTTGGAATGACTTCAACAGAATCAATGTCTTCATTTTCTTTGCCTCAAATTCCAATGTCTTTTTTTGCTGCTTGGAATGATGCAGCATAG 1656 0.3412 MKSFENIYDTINVRNQNSNMLGFSFSPQMNISVPSFAAAATETVPTSFYYHSTALHNYGFYYGLEGEHVGLYSPLPINMLDGSTYGIEALSRSQPQAMGIPQYECNTKEALQVNMDSIFYNQTSCHNKPNNPNNVSDVQENTSLLESLREHQEQQVSYYTVLGNRDVMLEGSMKNQLKDSVQLPNIVEDEVYDLKRWIPRDIHATSHAQESKYGLSMSPSSQSSCLTSSQQTSLIDSVSIDTMKSKPAIVKKNQNQSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDMEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASNNLLNSEEAKRNRKIDDVINIEEAINPMQKRCKIQSFSIGLDEIYNQEVEEYSNSVLHISNPSSIVTSLSSSREQSPENRTSLPMLFGMTSTESMSSFSLPQIPMSFFAAWNDAA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00509 551 Gene3D AP2/ERF domain 263 332 IPR036955 GO:0003700|GO:0006355
Tsu05g00509 551 Gene3D AP2/ERF domain 366 426 IPR036955 GO:0003700|GO:0006355
Tsu05g00509 551 SMART rav1_2 264 336 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 SMART rav1_2 366 430 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 CDD AP2 365 426 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 ProSiteProfiles AP2/ERF domain profile. 264 330 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 CDD AP2 263 330 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 213 462 - -
Tsu05g00509 551 ProSiteProfiles AP2/ERF domain profile. 366 424 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 Pfam AP2 domain 367 416 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 Pfam AP2 domain 264 322 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 SUPERFAMILY DNA-binding domain 263 332 IPR016177 GO:0003677
Tsu05g00509 551 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 209 - -
Tsu05g00509 551 SUPERFAMILY DNA-binding domain 365 425 IPR016177 GO:0003677
Tsu05g00509 551 PRINTS Ethylene responsive element binding protein signature 265 276 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 PRINTS Ethylene responsive element binding protein signature 406 426 IPR001471 GO:0003700|GO:0006355
Tsu05g00509 551 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 16 209 - -
Tsu05g00509 551 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 213 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00509 Tsu-Chr5 4103791 4107674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00509 57 550 AP2-EREBP Transcription Factor Family AT4G37750 43.662 7.10e-131 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu05g00509 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00509 K09285 - gmx:100812275 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00509 05 4103791 4107674 Tsu04g02212 04 24610001 24613750 PCT