Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00505 ATGGGAAGAGCTCCTTGTTGTGACAAAGCTAATGTCAAAAAAGGTCCATGGTCACCTGAAGAAGATGCAAAACTCAAGTCTTACATAGAACAAAATGGTACTGGTGGAAATTGGATTGCTCTTCCTCAAAAGATAGGACTCAAGAGATGTGGGAAAAGTTGTCGTCTTAGATGGTTAAATTATCTTCGACCAAATATTAAACATGGTGGTTTTtcagaggaagaagatgatattATTTGCAGTCTCTATGTTAGTATTGGAAGCAGGTGGTCTATCATAGCGGCACAATTACCAGGACGGACAGATAATGATATAAAGAACTACTGGAACACTAGGCTGAAGAAGAAGCTCCTTGGGAAACAAAGGAAGGAGCAACAAGCTCAAGCTCAAGCACATGCTCGCCGAGTCAACAACATGAAACAAGAGATGAAAAGAGAAGTAGATCATCATAATTTGATGGTAGCGGCGGCTACTTCTGGTGTTAATAATATGAGTACTCAAGCTCCTTATTGGCCAGCTGAGTATTCTCTTAATCCCATACCGGTTTCAAATTCATCCATAATTGACTATGATCTGAGCAATCAAACATCCTTCACAAGCTTGCTTCATCCTTCAACCATAATGAACATGTCAAACCCTTTGGCCATGGAGAGTAATGCAATTACAAACAATGGTGGAAATTGTCAACCATCACCTGTATTTCAAGGGTTTGAAAATTTTCCAAGTGATTTAAGTGATTTTCTATGTGTGAACCAACAGCAAATAATGGATAAAACAATTGATGGTTTTTATGGAATGGAATCCATGGATATGAGCAATAATGGTGGTAGCACAATCACAACAACTTCAACAGAAAGCACTAGTTGGGGAGATATGAACTCTTTGGTTTATTCACCTTTGGTTTCTGACTATGAAGGTTGTTGCCAACAAGGTTCAATTCCTCAAGATGTTGTTGCTTTTGATGAATCTAGGTATTTTGGAATGCAAATGCAATAA 996 0.3765 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDDIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQAQAHARRVNNMKQEMKREVDHHNLMVAAATSGVNNMSTQAPYWPAEYSLNPIPVSNSSIIDYDLSNQTSFTSLLHPSTIMNMSNPLAMESNAITNNGGNCQPSPVFQGFENFPSDLSDFLCVNQQQIMDKTIDGFYGMESMDMSNNGGSTITTTSTESTSWGDMNSLVYSPLVSDYEGCCQQGSIPQDVVAFDESRYFGMQMQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00505 331 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tsu05g00505 331 CDD SANT 71 113 IPR001005 -
Tsu05g00505 331 SMART sant 13 64 IPR001005 -
Tsu05g00505 331 SMART sant 67 115 IPR001005 -
Tsu05g00505 331 PANTHER OS09G0431300 PROTEIN 227 312 - -
Tsu05g00505 331 PANTHER OS09G0431300 PROTEIN 1 223 - -
Tsu05g00505 331 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu05g00505 331 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tsu05g00505 331 Gene3D - 70 147 - -
Tsu05g00505 331 CDD SANT 16 62 IPR001005 -
Tsu05g00505 331 Gene3D - 7 68 - -
Tsu05g00505 331 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu05g00505 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu05g00505 331 Coils Coil 122 146 - -
Tsu05g00505 331 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tsu05g00505 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu05g00505 331 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 227 312 - -
Tsu05g00505 331 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00505 Tsu-Chr5 4029982 4031286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00505 1 298 MYB Transcription Factor Family AT3G49690 48.137 4.67e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g00505 Myb_DNA-binding 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00505 K09422 - gmx:100812816 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00505 05 4029982 4031286 Tsu04g02215 04 24652337 24653599 PCT