Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00503 ATGggttttaatgatcaaaattctCTTCACCTTGTTCTAGGTTTATCTTTGAATACTTCTACTTCTACTACTACTCCAAAacaaaccaccaccaccaccgtgAATCCCTATTCCTCCACCGAGCCATCCTTAACGTTAGGACTCTCCGGGGAGAGTTATAACAACGTCCATAAAATCAACCAAACTTCTTCACCTCATAGTGTTGTTGTTTCATCTTTCTCAAATGGGAGAGTATTACAagtgaagagagaaagagaggaagaagaagaagaggtaGAAGAAGAAAGGGTTTCTTCAAGAGttagtgatgaagatgaagatgctACTAATGCTAGAAAGAAACTTCGGCTTACCAAAGAACAATCTTTACTTTTGGAAGAAAGCTTCAAATTGCAAAGCACTCTTAATCctAAAGAAAAACAAGCTTTAGCAAAGCAGTTGAATCTAAGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCAAGAACAAAGCTGAAGCAAACCGAAGTTGATTGCGAGTTTTTGAAGAAATGTTGTGAAACATTAACGGACGAAAATAGGAGGCTAAAGAAAGAGTTACAAGAGCTAAAATCATTGAAGCAAGCACAACCTTTGTACATGCCTATGCCTGCAGCCACACTCTCCATATGTCCATCTTGCGACCGGCTCGGCCGCGTCCCAGATGGTGGTTCGAATAAGAAGATCACTGCCTTCACCATGGCTCCCAATACTCACTTCTACAATCCTTTCAACAATCCTTCAGCTGCATGTTAA 780 0.3564 MGFNDQNSLHLVLGLSLNTSTSTTTPKQTTTTTVNPYSSTEPSLTLGLSGESYNNVHKINQTSSPHSVVVSSFSNGRVLQVKREREEEEEEVEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLQSTLNPKEKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKQAQPLYMPMPAATLSICPSCDRLGRVPDGGSNKKITAFTMAPNTHFYNPFNNPSAAC 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00503 259 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 8 259 - -
Tsu05g00503 259 Coils Coil 174 204 - -
Tsu05g00503 259 Pfam Homeobox associated leucine zipper 168 203 IPR003106 GO:0006355|GO:0043565
Tsu05g00503 259 SUPERFAMILY Homeodomain-like 105 169 IPR009057 -
Tsu05g00503 259 Pfam Homeodomain 112 166 IPR001356 GO:0003677
Tsu05g00503 259 PANTHER - 8 259 - -
Tsu05g00503 259 MobiDBLite consensus disorder prediction 95 109 - -
Tsu05g00503 259 ProSiteProfiles 'Homeobox' domain profile. 108 168 IPR001356 GO:0003677
Tsu05g00503 259 MobiDBLite consensus disorder prediction 19 43 - -
Tsu05g00503 259 SMART HOX_1 110 172 IPR001356 GO:0003677
Tsu05g00503 259 CDD homeodomain 112 169 IPR001356 GO:0003677
Tsu05g00503 259 Gene3D - 105 173 - -
Tsu05g00503 259 Coils Coil 78 98 - -
Tsu05g00503 259 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981|GO:0006355
Tsu05g00503 259 MobiDBLite consensus disorder prediction 81 109 - -
Tsu05g00503 259 SMART halz 168 211 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00503 Tsu-Chr5 3998639 4000395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00503 1 259 Homeobox Transcription Factor Family AT4G37790 57.193 5.12e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu05g00503 Homeodomain 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00503 K09338 - gmx:100795135 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00503 05 3998639 4000395 Tsu04g02218 04 24716022 24717514 PCT