LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g00496	ATGGAAAACAAACTcattttcattcttctcttttcGTTACTATGTTCAAATGCAAGCACTTTTTCACTCTCAAGAGACTATGAAATTTTGCTTCATGTCAAAAACACTCAAATTgatgacaaaaacaaaagtctCAACAATTGGATTCCAAACACAGAACATAATCCTTGTAACTGGACCGGCATAACCTGCAATTCACAAAACAAATCGGTTGTATCTATCGACCTCTCAGAAATCGGCATTTATGGCGATTTTCCCTTTAATTTCTGTCGAATTCCAACTCTGCAAAACCTTTCTCTTGCTGTCAATTATCTTGGCAATGAAATTTCCCCACATTCCATGTTACCATGTTCACACCTTCGTGTCTTGAACATCTCCGATAACTTATTTGTCGGAACCTTACCGGAATTCAACGCAGAAACCTTTCAACTAAGAGTACTCGACGCCTCAACCAACAACTTCTCCGGTGATATTCCGGCTAGTTTTGGCCGGTTTCCACACATGAAAGTACTCATTTTGTCTGATAACCTTTTAACCGGTGACATTCCGGTGAGTTTTGGCCTATTTCCGCAACTGAATGTACTTATTTTGTCCGGTAACTTTTTCACCGGAACAATTCCTTCATTTTTAGGTAATCTCAGTGAATTAACTCAATTTGAACTTGCTTATACAGAAACAATGAAACCAGGTCCTTTACCTTCTCAACTAGGAAATCTTAAAAAGCTAGAAATTCTCTACCTTGCCAATATCAACCTCATTGGTAACATACCAGATTCTATTGGAAACCTTATTTCCATCAAAAACTTTGATTTGTCTCAGAATTCCTTGTCTGGTAAAATCCCAGAAACCATTTCTGGtatgaaaaatgttgaaaaaattgaactttttgaTAATAATCTTTCTGGTGAAATTCCACAAGGCTTAACAAATCTGACAAATTTGTTTCTATTAGACCTCTCTCAGAATGCTCTCACCGGAAAATTGACGAAAGAACTAGCTTCAATGAATTTTTCTGTCCTTCACTTGAATGACAATTTTCTCAGTGGTGAAGTTCCTGAAAGTCTAGCTTTGAATCCAAATTTGCAGGATTTGAGTCTTTTCAACAATAGCTTTTCAGGGAAACTACCACAAGATCTTGGAAAATACTCTGCCATAGAAGCAATCGATGTTTCAACAAATAACTTCATTGGAGAGTTACCAAAGTTTCTCTGTCAAAAGAAGAAGCTTCAAAGACTTCTCACATTCAAAAACCGTTTTTCTGGTTCTCTTCCTGATGAGTATGGTGATTGTGATTCTCTTCATTATGTAAGAATTGAGAACAATGAACTCTCTGGTTCAGTTCCAGCAAAATTCTGGAACCTGCCAAAATTTTCTCTTCTGAAAATGGATCATAACAGGTTTGAAGGTTCAGTCTCAAGTTCAATCATAGCAAAGGGAATGATCAAACTAGTTTTAGCCGGTAATAGGTTTTCCGGTCAGTTTCCGGTAGGTGTCTGTGAACTTATTGAGCTCGTGCAAATTGACATCGGAAACAACCGATTTACCGGTGAAGTTCCTACCTGCATAACTGGTTTGAAAAAGTTGCAAAAACTGGATATGCAGGGGAACAAGTTCACCGGTAAAATTCCTGGTAATGTATCTGCATGGACTGAATTAACCGAGTTAAACTTATCGAATAACCTGTTCACTGGTTCAATTCCACCGGAACTTGGTAATTTGCCTGGTTTAATATACCTTGATCTCTCCGTTAATTCTTTAACGGGGAAGATTCCGGTGGAGTTAACAAACTTAAGGTTGAATCAGTTCAATGTTTCTGATAACAAATTGTCCGGTGAGGTTCCTTCGGATTTTAACCGCGAAGTTTACTTATCGGGTCTGATAGGTAACCCGGGTTTGTGTAGTAATGTTGTGAAAAACTTTCAACCTTGTTCAAAACATAGACCCTTTTCAGTTGTTACAATAATTGTTTTATCTGCTTCTGTTGTGTTGATTTTTGTGTCTGGTTTATGGTTCATAAAGAAAAAGTCAAAATCTTTTGTTGGAAAATCCAAAAGGGCTTTTAAAACAACTGCATTTCAGAGAGTTGGGTTCAATGAGGAAGATATAGTTCCATTTTTAACCAATGAGAATTTGATTGGAAGAGGTGGGTCGGGTCAGGTTTATAAAGTGAAAGTGAAAACGGGTCAAATAGTTGCTGTGAAGAAACTTTGGGGTGGTGGAACACAGAAACCTGATATAGAATCTGTGTTCAAATCAGAGATTGAAACATTGGGTAGAATTAGACATGCTAATATAGTGAAACTGTTGTTTTGTTGTAGTGCTGATGATTTCAGAATTTTGGTTTATGAGTATATGGAAAATGGGAGTTTAGGTGATGTTTTGCATGAGGGGAAGTTTTTGGAATTGTTAGATTGGTCTAAGAGATTTGGAATTGCTTTAGGTGCTGCTAAGGGGTTGGCTTATTTACACCATGATTGTGTTCCTCCTATTGTTCATAGAGATGTTAAGAGTAATAACATATTGCTTGATCATGATTTTGTGCCTCGTGTCGCTGATTTTGGACTTGCTAAGACGTTGCAGCATGATGCAAGTGATGGTGCTATGTCGAGAGTTGCTGGTTCATATGGCTACATTGCTCCAGAATATGGTTATACATTGAAAGTGACTGAGAAGAGTGATGTGTATAGTTTTGGTGTGGTGTTGATGGAATTGATAACTGGGAAGAGGCCAAATGACTCATATTTTGGTGAGAACAAAGATATTGTGAAGTGGACAACTGAGATTGCTTTATCAACATCTCATGAAGGAGGAGGCCTAGATTGTGTTGTGACAAAGATTGTGGACCCAAGATTGAACTTAGATACTTGTGATTATGAAGAGGTTGAAAAGGTTTTGAATGTGGCTCTACTTTGTACCTCAGCATTTCCAATTAATAGACCTTCAATGAGAAAAGTGGTTGAAATGCTTAAGGACCAGAAATTGGCTCGTCTCAAGTCATGA	3000	0.369	MENKLIFILLFSLLCSNASTFSLSRDYEILLHVKNTQIDDKNKSLNNWIPNTEHNPCNWTGITCNSQNKSVVSIDLSEIGIYGDFPFNFCRIPTLQNLSLAVNYLGNEISPHSMLPCSHLRVLNISDNLFVGTLPEFNAETFQLRVLDASTNNFSGDIPASFGRFPHMKVLILSDNLLTGDIPVSFGLFPQLNVLILSGNFFTGTIPSFLGNLSELTQFELAYTETMKPGPLPSQLGNLKKLEILYLANINLIGNIPDSIGNLISIKNFDLSQNSLSGKIPETISGMKNVEKIELFDNNLSGEIPQGLTNLTNLFLLDLSQNALTGKLTKELASMNFSVLHLNDNFLSGEVPESLALNPNLQDLSLFNNSFSGKLPQDLGKYSAIEAIDVSTNNFIGELPKFLCQKKKLQRLLTFKNRFSGSLPDEYGDCDSLHYVRIENNELSGSVPAKFWNLPKFSLLKMDHNRFEGSVSSSIIAKGMIKLVLAGNRFSGQFPVGVCELIELVQIDIGNNRFTGEVPTCITGLKKLQKLDMQGNKFTGKIPGNVSAWTELTELNLSNNLFTGSIPPELGNLPGLIYLDLSVNSLTGKIPVELTNLRLNQFNVSDNKLSGEVPSDFNREVYLSGLIGNPGLCSNVVKNFQPCSKHRPFSVVTIIVLSASVVLIFVSGLWFIKKKSKSFVGKSKRAFKTTAFQRVGFNEEDIVPFLTNENLIGRGGSGQVYKVKVKTGQIVAVKKLWGGGTQKPDIESVFKSEIETLGRIRHANIVKLLFCCSADDFRILVYEYMENGSLGDVLHEGKFLELLDWSKRFGIALGAAKGLAYLHHDCVPPIVHRDVKSNNILLDHDFVPRVADFGLAKTLQHDASDGAMSRVAGSYGYIAPEYGYTLKVTEKSDVYSFGVVLMELITGKRPNDSYFGENKDIVKWTTEIALSTSHEGGGLDCVVTKIVDPRLNLDTCDYEEVEKVLNVALLCTSAFPINRPSMRKVVEMLKDQKLARLKS	999

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g00496	999	Pfam	Protein kinase domain	708	914	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu05g00496	999	Gene3D	Phosphorylase Kinase; domain 1	685	784	-	-
	Tsu05g00496	999	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	830	842	IPR008271	GO:0004672\|GO:0006468
	Tsu05g00496	999	ProSiteProfiles	Protein kinase domain profile.	706	994	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu05g00496	999	Gene3D	Transferase(Phosphotransferase) domain 1	785	998	-	-
	Tsu05g00496	999	Gene3D	Ribonuclease Inhibitor	339	648	IPR032675	-
	Tsu05g00496	999	Gene3D	Ribonuclease Inhibitor	140	228	IPR032675	-
	Tsu05g00496	999	Gene3D	Ribonuclease Inhibitor	229	338	IPR032675	-
	Tsu05g00496	999	Pfam	Leucine rich repeat N-terminal domain	25	65	IPR013210	-
	Tsu05g00496	999	Gene3D	Ribonuclease Inhibitor	25	139	IPR032675	-
	Tsu05g00496	999	SUPERFAMILY	RNI-like	98	604	-	-
	Tsu05g00496	999	SMART	serkin_6	706	989	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu05g00496	999	Pfam	Leucine rich repeat	143	200	IPR001611	GO:0005515
	Tsu05g00496	999	SUPERFAMILY	Protein kinase-like (PK-like)	706	989	IPR011009	-
	Tsu05g00496	999	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	8	994	-	-
	Tsu05g00496	999	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2	8	994	-	-
	Tsu05g00496	999	ProSitePatterns	Protein kinases ATP-binding region signature.	712	735	IPR017441	GO:0005524
	Tsu05g00496	999	SUPERFAMILY	L domain-like	338	495	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g00496	Tsu-Chr5	3940960	3944317	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g00496	26	993	Receptor kinase-like Gene Family	AT5G65710	52.912	0.0	1014

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Tsu05g00496		Pkinase	1.3e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g00496	-		-	mtr:MTR_5g014720	1682.54