Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00490 ATGCGTCTCTTTCTTctccttttctttctcttcaatTTCCACCACCATGTTTTCTCTTTACCCATTTCAGAATACCGTGCACTTCTTTCTTTTCGTGAATCAATTACCGATTCTACCCCTCCCACACTCTCTTCATGGAACACTTCCACCACTCACTGTTCATGGTTAGGTATAACATGCGACACACGCCACCACGTCACCGCCTTAAACCTCACCGGATATAGCCTCTCCGGCGAACTTTCCGATCATCTCTCTCATCTCCCATTTCTCACTAACCTCTCACTCGCCGATAATAAATTCTCCGGTCCTATCCCTCCGTCGCTCTCCGCCGTCTCCGGTCTCCGGTATCTTAACCTTTCCAACAATGTCTTCAATGGAACTTTTCCTTCTGAGCTTTCTCAGATGAAGAATCTCGAAGTTCTTGATCTCTACAACAATAACATGACCGGAACGCTTCCTCTTGCGGTGACGGAGCTTCCGAATCTCCGTCATTTGCATCTCGGAGGTAACTACTTTACCGGTCAGATCCCGTCGGAGTATGGAATATGGAAACGGTTAGAGTATTTAGCTGTTTCCGGTAATGAACTTATCGGAACTATTCCACCGGAGATCGGAAACTTAACAAGTCTCCGTGAGCTTTACATCGGTTACTACAACACTTACACCGGCGGCATTCCGCCGCAGATTGGAAACTTAACAGAGCTTATACGTCTTGATGCTGCTTACTGCGGTTTATCCGGCGAGATACCGCCGGAGATGGGGAAACTTCAGAAACTTGACACACTGTTTCTTCAAGTGAATGCACTTTCCGGTTCCCTGACATGGGAGCTTGGAAACTTGAGAAGCTTGAAATCAATGGATTTGTCTAATAACATGTTAACCGGTGAGATTCCGACGAGTTTCGGTGAACTGAAGAATCTAACATTGCTTAATCTTTTTAGAAACAAGCTTCACGGTGCTATACCGGAATTTATCGGTGATATGCCGGCGTTGGAGGTTGTTCAGTTATGGGAAAATAACTTTACCGGTAACATTCCGGTGAGTTTGGGAACAAATGGAAGATTAACTCTTTTagacatttcatcaaacaaGTTAACTGGAACACTTCCACCTTATTTGTGTTCAGGGAATCATCTTCAAACTTTGATAACTCTTGGGAATTTTTTGTTTGGTCCAATTCCTGAATCTCTTGGTAATTGTGAATCTTTGAATAGGATTCGTATGGGTGATAATTTTCTTAATGGTTCAATTCCTAAGGGTCTTTTTGGTTTACCAAAATTGACTCAAGTTGAGCTTCAAGATAATTATTTATCTGGAAATTTTCCTGAAACTCATTCTGTTTCTGTTAATCTTGGTCAAATTACTCTGTCAAATAATCAACTTTCAGGAACTTTGCCTCCTACTATTGGGAATTTTTCAAGCATGCAGAAGCTTCTTCTTGATGGTAACATGTTTTCTGGTAAGATTCCATCTCAGATTGGAAGGTTACAACAGCTTTCAAAGATTGATTTTAGTCATAATAAGTTTTCGGGTCCTATTGCTCCTGAGATTAGTCAATGCAAGCTTTTAACTTTTGTTGATCTTAGTCGTAATGAGTTATCCGGGGTTATCCCGAATGAGATTACGAGTATGAGGATATTGAATTACTTGAATATTTCTAGAAATCATTTAGTTGGTAGTATTCCTGGTTCTATAGCCTCAATGCAAAGCTTAACTTCTGTTGATTTTTCGTATAATAATCTATCTGGTTTGGTTCCGGGTACTGGTCAATTTAGTTACTTTAACTACACGTCTTTTTTGGGAAACCCTGATCTTTGTGGCCCGTATTTGGGTGCTTGTAAAGATGGTGTTGTTAATGGTGCTAACCAATCTCATCATGATAAGGGTCATCTTTCGTCTACCGTGAAATTACTGCTTGTTATTGGGTTGCTTGCGTGCTCTATTGTGTTCGCTATTGCAGCGATATTTAAAGCTCGGTCTTTGAAGAAGGCTAGTGAGGCTCGTGCTTGGAAATTGACTTCGTTTCAACGTTTGGATTTCACTGCTGATGATGTTTTGGATTCCTTGAAGGAGGATAACATCATAGGAAAAGGAGGTGCTGGCATTGTTTACAAAGGGGCAATGCCGAATGGGGAACTCGTTGCTGTTAAAAGGCTTCCGGTTATGAGCAGAGGTTCTTCTCATGATCATGGATTCAATGCTGAGATTCAAACGTTGGGGAGAATCCGACACAGGCACATTGTTAGGTTGTTGGGTTTCTGTTCGAACCATGAGACAAATCTTTTGGTCTATGAGTACATGCCTAATGGAAGTTTAGGTGAAGTCCTTCATGGAAAGAAAGGCGGTCATTTATATTGGGATACAAGGTATAAAATTGCCGTGGAGGCCGCAAAGGGACTTTGCTATTTACACCATGATTGTTCCCCGCTTATTGTTCATCGAGATGTTAAATCAAACAACATCCTTcttgattcaaattttgaagCCCATGTTGCTGATTTTGGGCTTGCCAAGTTCTTGCAAGATTCTGGAACATCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCAGAGTATGCGTATACATTGAAAGTTGACGAGAAAAGCGATGTGTACAGCTTCGGTGTTGTTCTTTTAGAGCTTGTAACTGGAAGGAAACCAGTGGGAGAATTCGGTGACGGGGTGGACATTGTGCAATGGGTTAGAAAAATGACAGACTCCAACAAGGAAGGAGTTCTAAAAGTTCTTGATCCAAGACTTTCCTCAGTTCCTCTTCATGAGGTCATGCATGTTTTCTATGTAGCCATTCTGTGTGTTGAAGAACAGGCAGTAGAAAGGCCAACTATGCGCGAAGTTGTTCAAATTCTGACAGAGCTTCCAAAGTCGCCCGATTCTAAACAAGGAGACTCAACAATCACAGAATCCTCTTTATCAACATCAAATGCTTTAGAATCTCCAACTGCATCCTCTAAGGATCATCAACATCCTCCTCAATCGCCGCCACCTGATCTCTTAAGCATTTGA 3036 0.4104 MRLFLLLFFLFNFHHHVFSLPISEYRALLSFRESITDSTPPTLSSWNTSTTHCSWLGITCDTRHHVTALNLTGYSLSGELSDHLSHLPFLTNLSLADNKFSGPIPPSLSAVSGLRYLNLSNNVFNGTFPSELSQMKNLEVLDLYNNNMTGTLPLAVTELPNLRHLHLGGNYFTGQIPSEYGIWKRLEYLAVSGNELIGTIPPEIGNLTSLRELYIGYYNTYTGGIPPQIGNLTELIRLDAAYCGLSGEIPPEMGKLQKLDTLFLQVNALSGSLTWELGNLRSLKSMDLSNNMLTGEIPTSFGELKNLTLLNLFRNKLHGAIPEFIGDMPALEVVQLWENNFTGNIPVSLGTNGRLTLLDISSNKLTGTLPPYLCSGNHLQTLITLGNFLFGPIPESLGNCESLNRIRMGDNFLNGSIPKGLFGLPKLTQVELQDNYLSGNFPETHSVSVNLGQITLSNNQLSGTLPPTIGNFSSMQKLLLDGNMFSGKIPSQIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNELSGVIPNEITSMRILNYLNISRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVVNGANQSHHDKGHLSSTVKLLLVIGLLACSIVFAIAAIFKARSLKKASEARAWKLTSFQRLDFTADDVLDSLKEDNIIGKGGAGIVYKGAMPNGELVAVKRLPVMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLYWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLSSVPLHEVMHVFYVAILCVEEQAVERPTMREVVQILTELPKSPDSKQGDSTITESSLSTSNALESPTASSKDHQHPPQSPPPDLLSI 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00490 1011 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00490 1011 MobiDBLite consensus disorder prediction 964 1011 - -
Tsu05g00490 1011 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 1001 - -
Tsu05g00490 1011 MobiDBLite consensus disorder prediction 964 998 - -
Tsu05g00490 1011 Pfam Leucine Rich Repeat 282 304 IPR001611 GO:0005515
Tsu05g00490 1011 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Tsu05g00490 1011 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00490 1011 Gene3D Ribonuclease Inhibitor 355 616 IPR032675 -
Tsu05g00490 1011 Gene3D Phosphorylase Kinase; domain 1 656 766 - -
Tsu05g00490 1011 SUPERFAMILY RNI-like 69 390 - -
Tsu05g00490 1011 SUPERFAMILY L domain-like 351 610 - -
Tsu05g00490 1011 Gene3D Ribonuclease Inhibitor 274 354 IPR032675 -
Tsu05g00490 1011 Pfam Leucine rich repeat 113 171 IPR001611 GO:0005515
Tsu05g00490 1011 Gene3D Transferase(Phosphotransferase) domain 1 767 984 - -
Tsu05g00490 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Tsu05g00490 1011 SMART LRR_typ_2 111 135 IPR003591 -
Tsu05g00490 1011 SMART LRR_typ_2 568 591 IPR003591 -
Tsu05g00490 1011 SMART LRR_typ_2 280 303 IPR003591 -
Tsu05g00490 1011 SMART LRR_typ_2 304 328 IPR003591 -
Tsu05g00490 1011 SMART LRR_typ_2 496 520 IPR003591 -
Tsu05g00490 1011 SMART LRR_typ_2 353 376 IPR003591 -
Tsu05g00490 1011 SMART LRR_typ_2 159 181 IPR003591 -
Tsu05g00490 1011 SUPERFAMILY Protein kinase-like (PK-like) 684 960 IPR011009 -
Tsu05g00490 1011 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 1001 - -
Tsu05g00490 1011 SMART serkin_6 689 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00490 1011 Gene3D Ribonuclease Inhibitor 178 273 IPR032675 -
Tsu05g00490 1011 Gene3D Ribonuclease Inhibitor 22 177 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00490 Tsu-Chr5 3874856 3879119 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00490 14 990 Receptor kinase-like Gene Family AT5G65700 80.183 0.0 1595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu05g00490 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00490 - - ccaj:109800149 1725.29