Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00488 ATGGATAAATTAAACACATCTTCAAACGCATCATCAACTAGCTGGTTATCTAATatgCTCTTGGAAGAAATTGACATGGAGGGTTGTGATTTGTTTCAACAATGTgaacaaattcaacaaaatttgtttggtGATGAAGAATTTCTTTCACATGACATAGCAAGTGTTCTTCAACAAGATGAAATTTTActagaacaacaacaacagcctTTGTTATCTTCTGAAAGCTATTCTTCTATGGAAAGACCAAACAAAAAGTTGAAACCAAACACTATTTTACAAGATGTTTCCCCtgtttcttctccttcttctatAACTTCTCAGATTCTGTCTTTTGATTGTACCTTAAATACTACAAAACATAACGAGGTTGTTCCATTGTCATCACAAAAACATGTTCAACTAACTCAAAATCGAAAAGGGTCATTGCAAACTAGTAAGAATCAACAAGGACAAGGGACTAAGAGGTCTGTGGCACATAATCAGGACCATATCATAGctgagagaaagagaagagagaaactTAGCCAATGCTTAATTGCTCTAGCTGCTCTTATTCCTGGTTTGAAGAAGATGGACAAGGCTTCAGTCCTAGGAGATGCAGTCAAGTATGTAAAAGAGCTTCAAGAACGTTTGAAGGTATTGGAAGAACAGAACAAGAATACTACTTGTCATGTTGAGTCTGTAGTTACGGTCAATAATGGACCGCAACTAAGTTCTGATTCATCAAGCAATGACGAATCTGAAGCTGAAGCTGTGAGTGGTAATAATGAAGCTCTTGGTCCCCATGTTGAAGCAAGAATCTTGGACAAGGACGTACTCATAAGGATTCACTGCAAAAAGGAAAAGGGTCTTTTGCTTAAAGTATTGTTTGAGATTCAAAAGCTTCATCTCTTTGTTGTTAATAGCAGTGTCCTACCTTTTGGTAATTCTATCCTTGACATAACCATCATTGCTCAGatGGGAACAAGGTTCAAGTTGACAAGAGATAACCTTATAAAAAGCCTACGCGTGGCTGTATTAAGATCCATGTCATAA 1038 0.3353 MDKLNTSSNASSTSWLSNMLLEEIDMEGCDLFQQCEQIQQNLFGDEEFLSHDIASVLQQDEILLEQQQQPLLSSESYSSMERPNKKLKPNTILQDVSPVSSPSSITSQILSFDCTLNTTKHNEVVPLSSQKHVQLTQNRKGSLQTSKNQQGQGTKRSVAHNQDHIIAERKRREKLSQCLIALAALIPGLKKMDKASVLGDAVKYVKELQERLKVLEEQNKNTTCHVESVVTVNNGPQLSSDSSSNDESEAEAVSGNNEALGPHVEARILDKDVLIRIHCKKEKGLLLKVLFEIQKLHLFVVNSSVLPFGNSILDITIIAQMGTRFKLTRDNLIKSLRVAVLRSMS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00488 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 229 IPR036638 GO:0046983
Tsu05g00488 345 SMART finulus 165 214 IPR011598 GO:0046983
Tsu05g00488 345 MobiDBLite consensus disorder prediction 135 159 - -
Tsu05g00488 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Tsu05g00488 345 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Tsu05g00488 345 MobiDBLite consensus disorder prediction 135 163 - -
Tsu05g00488 345 MobiDBLite consensus disorder prediction 233 256 - -
Tsu05g00488 345 Gene3D - 158 232 IPR036638 GO:0046983
Tsu05g00488 345 PANTHER BHLH TRANSCRIPTION FACTOR 18 342 - -
Tsu05g00488 345 PANTHER TRANSCRIPTION FACTOR NAI1 18 342 - -
Tsu05g00488 345 MobiDBLite consensus disorder prediction 233 252 - -
Tsu05g00488 345 Coils Coil 198 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00488 Tsu-Chr5 3833058 3838836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00488 43 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.144 9.81e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g00488 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00488 - - mtr:MTR_5g014560 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00488 05 3833058 3838836 Tsu05g00488 05 3833058 3838836 ECH
Tsu05g00488 05 3833058 3838836 Tsu04g02232 04 24885354 24886734 PCT