Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00487 ATGGAAATTTCAGCTAGCAAAATGACATCAACTGATGAGTCATGGACAACTTGGTTATGTGATTTGGAACCAGAAGATTACAATTTAATCAATAACATTAACATAACCACTTTGCCACAAGAACCTGAAAACTTGCAACAAACTTTCTCTAGTGGTAGCCATTGTTCTCAAACAACTTCAAGCACTATGAGTAATTCCTCAGGTGATGTTGTTAACAGCTTTGAGGAAAGGCCTACAAAGATACTCAAGACTACCCCTTCAAACACAGGGTACCCTAAAGATTCTAATTCTCATTCCTACATTCTTTGTTTTAACAATGAAAATCCAGAAACAGAACCAATATTGAACATTGATTCAACTTTGAAACCAAAAGCCAAGATTTTGAATCATGATGGGAAATCTTTAATCTCAAAAGGGGTAtcagaaaatcaaaaaaaggaACCTAAACGCAATATTCAAGAGAGTAAGAAGACTGATTCAGTTACAAGAAATGCTAAAGATCACATAATTGctgagagaaaaagaagagaaaaaattagtcAACAGTTCATAGCTCTTTCAGCACTTATTCCAGACTTAAAAAAGATGGATAAAGCTTCTGTATTAGGAGATGCTATAAACCATGTGAAACAGCTTCAAGAACAAGTGAAGGTACTAGAAGAAAagaaccaaaagaaaaatatagaatCTGTGGTATATGTTGAGAAGACAAAGTCATGTTCTTCAGATGAAGATGTCTCAGACAACACTTCATCAAATTCTGAGTATGGTAATTGCTGTCATCTCTCAAGGTCACTGCCAGAAGTTGAGGCAAGAGTGTCAGAGAAGAACGTGCTTATAAGAATCCATTGTGAGAAACAAAAGGGTGTGTTGATGAACATAATCCAAGAGATAGAGAATCTTCATCTATGTGTCACAAGTAGTAGTGCATTGCAATTTGGAACCACCAAACTTGACATAACCATCATAGCCGAGATGTATGAGGAGTTCAACCTAAGTGTGCAGGAGCTAGTTAGAAACCTTCAAGTTGGACTCTTGCAATTCATGACATAG 1053 0.3419 MEISASKMTSTDESWTTWLCDLEPEDYNLINNINITTLPQEPENLQQTFSSGSHCSQTTSSTMSNSSGDVVNSFEERPTKILKTTPSNTGYPKDSNSHSYILCFNNENPETEPILNIDSTLKPKAKILNHDGKSLISKGVSENQKKEPKRNIQESKKTDSVTRNAKDHIIAERKRREKISQQFIALSALIPDLKKMDKASVLGDAINHVKQLQEQVKVLEEKNQKKNIESVVYVEKTKSCSSDEDVSDNTSSNSEYGNCCHLSRSLPEVEARVSEKNVLIRIHCEKQKGVLMNIIQEIENLHLCVTSSSALQFGTTKLDITIIAEMYEEFNLSVQELVRNLQVGLLQFMT 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00487 350 Gene3D - 162 233 IPR036638 GO:0046983
Tsu05g00487 350 MobiDBLite consensus disorder prediction 135 165 - -
Tsu05g00487 350 CDD bHLH_AtNAI1_like 164 236 - -
Tsu05g00487 350 PANTHER BHLH TRANSCRIPTION FACTOR 10 346 - -
Tsu05g00487 350 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 10 346 - -
Tsu05g00487 350 MobiDBLite consensus disorder prediction 140 165 - -
Tsu05g00487 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 229 IPR036638 GO:0046983
Tsu05g00487 350 SMART finulus 169 218 IPR011598 GO:0046983
Tsu05g00487 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Tsu05g00487 350 MobiDBLite consensus disorder prediction 46 71 - -
Tsu05g00487 350 Pfam Helix-loop-helix DNA-binding domain 168 213 IPR011598 GO:0046983
Tsu05g00487 350 Coils Coil 202 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00487 Tsu-Chr5 3823385 3825915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00487 16 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.784 1.55e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g00487 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00487 - - lang:109348843 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00487 05 3823385 3825915 Tsu05g00487 05 3823385 3825915 ECH
Tsu05g00487 05 3823385 3825915 Tsu04g02234 04 24897834 24910202 PCT