Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00486 ATGATGGAAATTATGTCTCCTATCTATTTGCCTGAACTTGGAATGGAGGATCTCAACTTCTTGCACCAATACCCTATGGATTCTCTTGCATCTGATGCATTTGACAACCTTGGATTTCACTTTGACAACAACTACGAAACAGTACCAAATTGTTTCCCAGTTGAAACTCATCATCATGAAGATAACTACGTTGCTCAAACAAGACCAACCAAGAAGATCAAGACATCAACTAACAATTCTTCCTATTCATCACCTCAACTCATTTCATTTGAGCACTCCAATGCAACGCCAATTGCATCTAATGAGGAATTTTACAGCCTTGATTACTCCGAtgtaaaacctaaaatcgaGAAAGGGCGTAGTGAAAACAAGGATTTTGCGGCAAATTATGATAACCGAGCAAATCATACCAGGAATACAACTCAAGCTCAAGAACATGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTCACTCGAAGTTTCATTGCTCTTTCGGCCATCATTCCTGGCCTTAAGAAGATGGATAAAGCATCTGTGTTGGGAGATgcaataaaatatatgaaacaACTAAAAGCACGTTTGCAAACACTTGAAGAACAagttgaagaaaacaaaaaaggtgGATCCGCAGTTCAAGTAAAGAGATCTGTTATCTTCACTGATAATGACCATGATGACAACAACAAGAAGACACATCTTCCTGAAATGGAAGTAAGAGTTTCAAACAAAGATGTACTCATCAAGATTCAATGTGATAAACACAGTGGACGTGCCGCTACGGTGCTTGGCCAATTAGAAAACCTTAATCTCACTGTCCATAGTAGTACCTTTTTGCCCTTTGGAAACAACATTGTTGATGTAACTATTGTTGCTCAGATGAACAAGGAAAACTGTGTGACAGCAAAGGATCTCCTAGGAAGCATACGACAGGCTTTGATcagttga 945 0.3693 MMEIMSPIYLPELGMEDLNFLHQYPMDSLASDAFDNLGFHFDNNYETVPNCFPVETHHHEDNYVAQTRPTKKIKTSTNNSSYSSPQLISFEHSNATPIASNEEFYSLDYSDVKPKIEKGRSENKDFAANYDNRANHTRNTTQAQEHVMAERKRREKLTRSFIALSAIIPGLKKMDKASVLGDAIKYMKQLKARLQTLEEQVEENKKGGSAVQVKRSVIFTDNDHDDNNKKTHLPEMEVRVSNKDVLIKIQCDKHSGRAATVLGQLENLNLTVHSSTFLPFGNNIVDVTIVAQMNKENCVTAKDLLGSIRQALIS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00486 314 Pfam Helix-loop-helix DNA-binding domain 144 191 IPR011598 GO:0046983
Tsu05g00486 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Tsu05g00486 314 PANTHER BHLH TRANSCRIPTION FACTOR 2 313 - -
Tsu05g00486 314 SMART finulus 147 196 IPR011598 GO:0046983
Tsu05g00486 314 Coils Coil 180 207 - -
Tsu05g00486 314 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 2 313 - -
Tsu05g00486 314 Gene3D - 131 206 IPR036638 GO:0046983
Tsu05g00486 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 207 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00486 Tsu-Chr5 3812350 3814574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00486 2 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.615 3.17e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g00486 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00486 - - cam:101507557 342.813