Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00484 ATGGCTATGCAACAAATCATATGcacttcctcttcatcttctttgaaaaaatatgatgtttttatTAGCTTTCGTGGTGAGGATACTCGTACAAAATTCACAAGCTATCTTTATGATGCTCTGAGCAAGAAAAATGTTCTAACTTTTATTGACGAAAAGGAGCTTCAAAAAGGAGATGAGATCTCTTCAACACTTATCAAATCCATTGAGGAGGCATATGTATCTGTAGTCATCTTCTCACAAGATTATGCTTCCTCAAAATGGTGCTTGGATGAACTCGTCAAAATTCTTGAATGTAAGAAAGATCGAGGACAAATTGTGATACCTGTTTTCTACGAAATAGATCCATCACATGTGAGGTATCAGATTGGGAGTTATGGAAAAGCTTTTGAAAAACATGAGCAAGACTTGAGGTTTAACAATGACAAGTTGCAGAAATGGAGAAGTGCTCTCACTAAAGCATCCAATTTATCTGGGTGGAACTCCCGAGATTACAGGATTGAATCAAATTTCATCAAGAACATTGTTGAAGATGTTTTTAAACAATTGACTCGTAAACTCCCATNTATGACAACATTTGCTTATTATTTTAATAAGGATATTGTTGGAATTGAGAAAAAGTACAAAGAGATTGAATTGTTACTGAAAATTGGATCAGCTGATGTTAGAACCCTTGGCTTATGGGGCATGGGAGGCATAGGAAAGACCACTCTAGCTGAGTATGCATATGCTAAACTGTCTTTTCAATTTGAACGTCGTTGTTTGCTGGAAAATGTAAGGGAAGAATCTACCAGGCGCGGACTCCTAGATGTACGTAAACTTCTTCTTTCTAAATTGTTTGAGTTTCCACCTAATGTAGAAACTCGAATTTTAGAAAGAAGACTTGCAGGTGAAAAAAGTTTAATTGTGTTGGATGATGTGGCAACTTTACAGCAAGCAGAAAATCTTAACATGTGCTTGGGACCGGGTAGTAGAATCATTGTCACAGCTAGAGATAAGCAAATATTTAGTCAGTTTAATCGATGTGAAATTTATGAGGTTGAAGGATTGGACAAAGATGATTCTCTTCAACTATTCTGTAGGCATGCCTTCGAGGAAAAACATGCTAAAGTTGGATATGAAGAGCTCTTAGAAAGGGCAATTGGGTATTGCGGAGGCAATCCTCTGGCTTTAAAAGTCTTAGGTACGAATTTTCGTACAAAAAGCAAAGAAGTGTGGGAAAGTGAACTGGAGAAGCTCAAAGAGATTCCTAATAGGACAATTCATGATGTGTTAAAATTGAGTTTCAATGACTTAGATCATTCTGAACAAGACATATTTCTAGACATTGCATGCTTCTTTAAGTTGAGATTATATCATAGTCATGTTGATAATGATCTCCTAATAACAGTGCTATTGGATGCTTGCAATTTTTATGCGGTAAGTGGGATAGAAGCCCTTTGCAATAAAGCACTCATAACTCGTAAGCCTAATTCAATTGAAATGCATGATTTGTTAGTAGAAATGGGACGAGAGATTGTTAATGAAGAATCTCGTAAAGACCCCGGAAGAAGAAGTCGATTGTGGGATTCTAAGGATGTATATGATGTATTGAAATATAACAAGggaACCAAATATGTTGAAGTTATAAGTTTCCAGATCGATAGTTCCAAAATTGAGGATCTATACTTGAGCTCTGATGCCTTTAAAAGCATGATCAACTTAAGATATCTTCATATCACCTATAATGGGTATTTTGCAAACAAGGTGCACTTACCTAAAGGTCTTAAATGGTTATCTGATAAATTGAGGTACCTTCATTGGGATTTATTCCCACTTAAGTCTTTACCATCGACCTTTTGTCCTGAAAGGCTTGTAGTACTTAAGATGACCCGTGGCAAGTTTAGAAAGCTTTGGAATGGAATTCAGAAGTTGGACAATTTAATGATTCTTGATCTCCAGTTCTCCAAAGACTTAATTGAGATCCCAGACTTGTCAAGGGCACCAAATCTTGAAATTGTGGATCTTTATAATTGTGAGAGTCTCGGTCAACTCCATCCATCCGTTTTCACTTGCCCCAAGCTTAGAAAACTACTTTTGAGAGGTTGCCAAAAGATTAAAAGCCTGAAAACTAACATTCATTCAAAATCTCTTGAAGTACTCGTTCTCTCTGGTTGTTATTCTCTTGTGGAATTTTCGGTGACTTCGGAGGAAATGACGTCGTTGGCGTTAAGTAGCACCGCTATAAGTGAATTTCCTTCATCGATTTGGCGTAATAGCAAACTCACTCAGCTCTTTCTAGATGGTT 2287 0.362 MAMQQIICTSSSSSLKKYDVFISFRGEDTRTKFTSYLYDALSKKNVLTFIDEKELQKGDEISSTLIKSIEEAYVSVVIFSQDYASSKWCLDELVKILECKKDRGQIVIPVFYEIDPSHVRYQIGSYGKAFEKHEQDLRFNNDKLQKWRSALTKASNLSGWNSRDYRIESNFIKNIVEDVFKQLTRKLPXMTTFAYYFNKDIVGIEKKYKEIELLLKIGSADVRTLGLWGMGGIGKTTLAEYAYAKLSFQFERRCLLENVREESTRRGLLDVRKLLLSKLFEFPPNVETRILERRLAGEKSLIVLDDVATLQQAENLNMCLGPGSRIIVTARDKQIFSQFNRCEIYEVEGLDKDDSLQLFCRHAFEEKHAKVGYEELLERAIGYCGGNPLALKVLGTNFRTKSKEVWESELEKLKEIPNRTIHDVLKLSFNDLDHSEQDIFLDIACFFKLRLYHSHVDNDLLITVLLDACNFYAVSGIEALCNKALITRKPNSIEMHDLLVEMGREIVNEESRKDPGRRSRLWDSKDVYDVLKYNKGTKYVEVISFQIDSSKIEDLYLSSDAFKSMINLRYLHITYNGYFANKVHLPKGLKWLSDKLRYLHWDLFPLKSLPSTFCPERLVVLKMTRGKFRKLWNGIQKLDNLMILDLQFSKDLIEIPDLSRAPNLEIVDLYNCESLGQLHPSVFTCPKLRKLLLRGCQKIKSLKTNIHSKSLEVLVLSGCYSLVEFSVTSEEMTSLALSSTAISEFPSSIWRNSKLTQLFLDG 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00484 762 Gene3D - 191 346 IPR027417 -
Tsu05g00484 762 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Tsu05g00484 762 Gene3D - 349 433 IPR042197 -
Tsu05g00484 762 PRINTS Disease resistance protein signature 384 398 - -
Tsu05g00484 762 PRINTS Disease resistance protein signature 224 239 - -
Tsu05g00484 762 PRINTS Disease resistance protein signature 636 652 - -
Tsu05g00484 762 PRINTS Disease resistance protein signature 294 308 - -
Tsu05g00484 762 SMART till_3 17 157 IPR000157 GO:0007165
Tsu05g00484 762 Pfam TIR domain 17 188 IPR000157 GO:0007165
Tsu05g00484 762 Gene3D - 14 188 IPR035897 -
Tsu05g00484 762 ProSiteProfiles TIR domain profile. 16 183 IPR000157 GO:0007165
Tsu05g00484 762 SUPERFAMILY "Winged helix" DNA-binding domain 420 532 IPR036390 -
Tsu05g00484 762 Gene3D Ribonuclease Inhibitor 469 762 IPR032675 -
Tsu05g00484 762 SUPERFAMILY L domain-like 548 761 - -
Tsu05g00484 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 443 IPR027417 -
Tsu05g00484 762 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 760 IPR044974 GO:0006952
Tsu05g00484 762 Pfam NB-ARC domain 211 415 IPR002182 GO:0043531
Tsu05g00484 762 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00484 Tsu-Chr5 3754194 3781761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00484 13 749 WRKY Transcription Factor Family AT4G12020 32.761 1.61e-95 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00484 - - mtr:MTR_2g037140 877.856