Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00479 ATGGCTACAGATATTGGCCTTCTTTCCAATATGACTCAGATCCAAAAATCTTCACAATCACAATcccaacaacatcatcaaccaAACCCTAACTCCAACACCACCACAGCCTCACAACAATCACCATCAACTTGGATGTGGAACCCTAAAcatcaccaacaacaacaaaatgaagaagaagatgaagattcatgGGAGGTAAGAGCTTTTGCTGAAGATACAAGGAACATCATGAACACAACATGGCCACCAAGGTCTTACTCTTGTACTTTTTGTAGAAGAGAGTTCCGGTCAGCACAGGCTCTCGGCGGTCACATGAATGTTCACCGCAGAGACCGTGCTCGCCTTCATCAAAATCAACCACCATTAAATTCCTCTCATCATCCTTCGTCTTCGCCGTTCATAAATATCCCTCCTCAAGAGCTTGTTGCAAATGCTGGATTGTGCTTTCTTTACCATTTACCAAACCCTAATAATAATGTTATTGCTTCTTCTTTCAATGGTTCTAATGGAGAAACTCCTTCAACTCTTCTTTCtatttcatcatcaacatcttATCCACCAAATAACTtgatgatgcaaatgcaaatgcaaactTGTTCTCCTCCATCTTTTAATTTTCAGGCTAATTCAGCTAGGATGATCAATCATAgcatttcttctttttctagcAAAGTGGACCAACAAACTGCTATTTGCACCTCCATAGAAGATAATGGTCATGGAATTGAAGAACTTGATCTTGAGCTTCGATTGGGGAACAAGCCATGA 771 0.3437 MATDIGLLSNMTQIQKSSQSQSQQHHQPNPNSNTTTASQQSPSTWMWNPKHHQQQQNEEEDEDSWEVRAFAEDTRNIMNTTWPPRSYSCTFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNSSHHPSSSPFINIPPQELVANAGLCFLYHLPNPNNNVIASSFNGSNGETPSTLLSISSSTSYPPNNLMMQMQMQTCSPPSFNFQANSARMINHSISSFSSKVDQQTAICTSIEDNGHGIEELDLELRLGNKP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00479 256 Pfam C2H2-type zinc finger 87 111 - -
Tsu05g00479 256 PANTHER OS07G0101800 PROTEIN 46 253 - -
Tsu05g00479 256 MobiDBLite consensus disorder prediction 1 52 - -
Tsu05g00479 256 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tsu05g00479 256 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 46 253 - -
Tsu05g00479 256 SUPERFAMILY beta-beta-alpha zinc fingers 84 114 IPR036236 -
Tsu05g00479 256 Gene3D Classic Zinc Finger 78 136 - -
Tsu05g00479 256 MobiDBLite consensus disorder prediction 1 65 - -
Tsu05g00479 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00479 Tsu-Chr5 3727593 3728513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00479 43 256 C2H2 Transcription Factor Family AT4G17810 37.900 9.81e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g00479 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00479 - - lja:Lj2g3v1984740.1 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00479 05 3727593 3728513 Tsu05g00479 05 3727593 3728513 ECH