Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00477 atggAATCGCACGACCAAAATCTTGAATAtgaaccacaacaacaacaaccatcCCAGCCATTTCATAATCCTCAGCTTCCTCACAACCTTCAAAATGCAACTATAGTTTTGGGGGGTCCCAATTCGTTTACAAACAGCACGGTTTCGACCACTATGATGACACCTGCCACTGCTCGGTTTCCTCCGTTCAACATGAACACTAACCCTTCTCATTCTGATAGTTCGAACAACAACATTAATGCTACTATAAGTTTACTTCCAACTGCTCCGTCCACCACCTTGATGCCATGCATGACGGTGGTGGGAGGTTCTTCCTCCGTTCCCTCTGACTCTGATTCAGTTAAGAGAAAGAGGGGGAGGCCAAGGAAGTATTTTGCTGAAAGTGAGGTTGATTTGGGCTTGGGCTCCAGCTCAGGCTCAGGTCAAGCTCAAACTGCTGCTGCGGCTACTCCTGCTGCTGCAGCAGTTACTTCTCATGACTCTTCGGTGAAGAGTACTAGAGGAAGAGGAAGGCCTCGTGGCTCTTATAAGCAGAAGAATGATGTTGAAGTTTCTGGAGGACTTGCTGGCACTTGTTTTTATCCATATGTGATCATTGTGAATCCTGGAGAGGACGTTGTTGCGAAACTTACAGCTGCTTGTCGCGGAGGACCTAATTCTGAGATCTGCATACTTTCTGCAGATGGTTTTGTTAGCACTGTTGCCCTTCAACAGCCGCAAAACATTGTTACTTATGAGGGACTATTTGAAATTGTATCCCTGTCAGGCACCTTTGTATCTGGGAACAACAATGGCGGTAAAAGAATGATTAACTGGAAGGTATCTCTAGGGGGAGGTTCTGATGCACACATTTGGGGAGGTGTGGTTGCTGGTAAGCTTATTGCGGCATCGTCTGTAAAGGTCATATTGGGTAGTTTTACTGTGGATGGGAAAAAAGCTAGCTCAAATAACTGGAATTCTGGGCCTTCTTCGGCGCCATCATCGCAATTTGCTGCTGTTGGGACTCCAACAAATGTTGCTACATCTCAAGGGCATTCATCTGAGTCCTCTGGTGACAATGAGGACAGTCCTTTTACTCAGGGAACATCTGGAGTCTACAACTACAACAATGCTGGTCAGGCGATTCCCAACATGGCGCTATACCAGCAAATGTGGGCTCACCATAATCAGCCGTGA 1176 0.4549 MESHDQNLEYEPQQQQPSQPFHNPQLPHNLQNATIVLGGPNSFTNSTVSTTMMTPATARFPPFNMNTNPSHSDSSNNNINATISLLPTAPSTTLMPCMTVVGGSSSVPSDSDSVKRKRGRPRKYFAESEVDLGLGSSSGSGQAQTAAAATPAAAAVTSHDSSVKSTRGRGRPRGSYKQKNDVEVSGGLAGTCFYPYVIIVNPGEDVVAKLTAACRGGPNSEICILSADGFVSTVALQQPQNIVTYEGLFEIVSLSGTFVSGNNNGGKRMINWKVSLGGGSDAHIWGGVVAGKLIAASSVKVILGSFTVDGKKASSNNWNSGPSSAPSSQFAAVGTPTNVATSQGHSSESSGDNEDSPFTQGTSGVYNYNNAGQAIPNMALYQQMWAHHNQP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00477 391 Gene3D - 195 317 - -
Tsu05g00477 391 MobiDBLite consensus disorder prediction 102 122 - -
Tsu05g00477 391 MobiDBLite consensus disorder prediction 8 27 - -
Tsu05g00477 391 Pfam AT hook motif 166 174 IPR017956 GO:0003677
Tsu05g00477 391 Pfam AT hook motif 115 125 IPR017956 GO:0003677
Tsu05g00477 391 MobiDBLite consensus disorder prediction 312 363 - -
Tsu05g00477 391 SUPERFAMILY AF0104/ALDC/Ptd012-like 193 307 - -
Tsu05g00477 391 Pfam Plants and Prokaryotes Conserved (PCC) domain 195 307 IPR005175 -
Tsu05g00477 391 SMART AT_hook_2 166 178 IPR017956 GO:0003677
Tsu05g00477 391 SMART AT_hook_2 115 127 IPR017956 GO:0003677
Tsu05g00477 391 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 45 357 - -
Tsu05g00477 391 MobiDBLite consensus disorder prediction 1 27 - -
Tsu05g00477 391 MobiDBLite consensus disorder prediction 135 179 - -
Tsu05g00477 391 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 357 IPR039605 GO:0003680
Tsu05g00477 391 CDD DUF296 195 306 IPR005175 -
Tsu05g00477 391 ProSiteProfiles PPC domain profile profile. 190 328 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00477 Tsu-Chr5 3704679 3707228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00477 110 336 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 39.526 9.69e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00477 - - cam:101504328 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00477 05 3704679 3707228 Tsu04g02239 04 24998744 25004624 PCT