Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00474 ATGGGAGGGACTTCACTGCCTCCGGGTTTTCGATTCCATCCAACTGATGAAGAACTGATAGGATATTACCTGAAGAGAAAAGTTGAGGGACTTGAAATTGAGCTTGAAGTTATACCTGTGATTGATTTCTACAAATTTGATCCATGGGAGTTGCCTGAGAAATCTTTTCTACCAAAAAGAGACATGGAATGGTTTTTCTTCTGTCCACGAGATCGCAAGTACCCGAATGGATCAAGGACAAATAGAGCCACCAAAGCTGGCTACTGGAAAGCCACTGGAAAAGACAGGAAGGTTGTGTGTGAGCCTAGTCCATTCATTTCCACAGAGACTGTCACAGGTTACCGCAAGACCCTGGTTTTCTACTGTGGAAGGGCTCCTTTAGGTGATCGAACCAACTGGGTCATGCATGAATATCGCCTCAACGATGATCCTAGCCAAGGATCAGAGGGTGTTTTTGCCTTGTGCCGAGTTATTAAAAAGAATGAGAAAGTAAATGATTCCCAAGGACAAGGAGGAAAGAGGGTTAGAGCTAATGACGAGAACAATTCCATTTCCACCGACGGGAATGACATTTCTTGTCAGGCAAGTCAGATGTGCAGTGGTAATGACAGTCACTTTTCAAGTCCTATTGATTTCCCAAGCAATTTGCGTAATATGGCTGGATTGGACCAAGCTTCCTCTGACACCAATCCTTCAACCTTCTGGCTCTCCCCTGACATGATTCTTGATTCTTCAAAGGATTACTCTCAAATGCAAGTACAAGATGTTGAGGGATGTTTTCAACAGCAACATGACTTATCGAGTACAATGACACCTTGGCAATCATTTGAACATACCGAAATTTCACCTTGTTCATCCTACTCAAATTTTAATGCAGAAATTGAATTTTCTGATGCTCTTAGTCGAATTGGTTGCGTGTCACCTTACTTAGGACAAGGAAGCTTCATGGACTTGCCTTATGAATGCTATGATCAAATTCCTACATTCACAAACCCAAATCAattctga 1008 0.4216 MGGTSLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCEPSPFISTETVTGYRKTLVFYCGRAPLGDRTNWVMHEYRLNDDPSQGSEGVFALCRVIKKNEKVNDSQGQGGKRVRANDENNSISTDGNDISCQASQMCSGNDSHFSSPIDFPSNLRNMAGLDQASSDTNPSTFWLSPDMILDSSKDYSQMQVQDVEGCFQQQHDLSSTMTPWQSFEHTEISPCSSYSNFNAEIEFSDALSRIGCVSPYLGQGSFMDLPYECYDQIPTFTNPNQF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00474 335 MobiDBLite consensus disorder prediction 165 188 - -
Tsu05g00474 335 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Tsu05g00474 335 MobiDBLite consensus disorder prediction 171 188 - -
Tsu05g00474 335 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Tsu05g00474 335 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 335 - -
Tsu05g00474 335 Pfam No apical meristem (NAM) protein 7 140 IPR003441 GO:0003677|GO:0006355
Tsu05g00474 335 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Tsu05g00474 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00474 Tsu-Chr5 3676825 3678727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00474 1 295 NAC Transcription Factor Family AT4G17980 54.667 1.08e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu05g00474 NAM 5.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00474 - - adu:107487585 441.039