Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00465 ATGGTTTGTACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTCAAGGAGACAACAATTCTGCTTCTGAAATAAGAGCAAAGCTTGAATCTATGGACTATAATGTTTCTACCTTCTACAACGAGAATGAAGCCTTGTCAGCGATCTCAAGTAGTTCCAAAAATTTCCATGTTGCTGTAGTGGAGGTGAGTATAAGCTGCCCTGATGGAGGTTTCAAATTTCTTGAGAATGCGAAGGACTTGCCAACCATTATGACTTCAAACAGTCAGTGCATAAACACCATGATGAAGTGCATTGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCTGAGgacaaactaaaaaatatttggCAGCATGTGGTTCACAAGGCATTCAATGCTGAGTCAAGTGCTCAGTCTGAATCACTAAAACCTGTCAAAGAATCGGTAGAGTCTATGTTGCAGCTCGAAACAGACAACAAATTACATGAGAGTACAATATTGATAGATTTAGAGAACGTGTCCAAGACTAGTGATAATGAACAAGAGCATTCTGCGGCAAGTGATAAATATCCGGCTCCTTCGACCCCTCAGTTAAAACAAGGTGCGAGGTTAGTGGATGATGGGGATTGCCATGAGCCGACTAATTGCTcaatagaaaaagaaagtggGGAACACGATGGTGGTGAATGTAAATTTGTCGAAACTTCATGCGAGAATGTGAATGCAGAAAGTTCTCCTCAACCAACGAAACCTCTGATTAAGGAGGAAGATGATTCTGCCAATGGTTCAAAAGGGGAGAGTAGTGTTTTAACGAATCCACAAAGTAAGAAGTTACTCGGCGACACTGGTGGTAATGCATCTCCAAATGAAACAAGTGGTCCCAAGGATTCATGTGAGAATAAAGCTAATCGAAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTCGTGAAGGCAGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGATCATGCACACGGACGAAGATCGAAAATGGccaaatcaaaaaaattcaatgcaAAGGAACTATTGTATGCAAAGACCAATCATGGCCTATCCACCGTATCATTCTAATCACACCTTTCCTCCAGCTCCTGTATATCCTATGTGGGGACAACCTGGAAGTCAAACAGCCGGTGTACCGATTTGGACTCCGCCTGGTTATCCTCTATGGCAACAACCTACAGAAAGTTGGCATTGGAAGCCTTATCCGGAGGTGCATGTAGATGCATGGGGCAACCCAATGTTGCCACTTCATCAAACTCCTTATGTACCCTACACTCAAAATATAGCTGGGTTCCATAATGCTAAAGCAGTGGATTATAGATTTGGCATGCCTCAAAATTCCTTTGACGATTATCCAGCAGAGGAAGTGGTGGACAAGGTTGTGAAGGAGGCAATAACCAAACCATGGCTACCATTACCAATAGGCCTCAAACCTCCTTCAATGGATAGTGTTTTGGATGAACTTACCAAACAAGGTGGTGGTAAACTAAAAAAAGACAACATGCCGTTTGGAGTTTGTCAAATCTTTGTTGACAAGTGGTTGGTTGGATTGGAGGTTGGAACCTTTGGATACACTTATTATTGTCCGATGCtagCGAAATACAAAACGAAGCTTCCCAATTCCATTTCTGTAGAAAAACTAATCATCGATTCAATTTCATCTAAAACTAATCGAAAGGGCTTCTGGGAATGCATTTTGAAGCTTTTGAACTTCATACTAACCGTGACTGGTTTGGCCATGGTGGGTTATGGGATCTATTTGCTGGTTGTATTCAGTAAAGCTTCTGATGACGACACGCCGGAGATTTCTCCGGTCAGTGATGATAGTGCTCTAATTCAACTTGGGCGGCCGATGCTTATGGCTGTGTCTCTATCTGATAGCATTTTTGATAAGTTGCCTAAGGCTTGGtttatttacttgtttattGGTGTCGGGGCGGTTCTCTTCGTTGTTTCTTGTTTTGGATGTATTGGAGCTGCGACACGTAACGGTTGCTGCCTAGTTTGTTATTCAATTTTGGTGGCACTGTTGATCTTGGTTGAGCTGGGATGTGcagcctttttattttttgacaaaagctGGAAAGAAGAAATTCCGACAGACAAAACTGGAGACTTTGATATGATATATGGGTTTCTAAGAGAGAATTGGAATATTGTGAGATGGGTTGCTCTTGGGATTGTCATCTTTGAGGTAAACAAAAAGTTGTTTGATTGGCATTTAAAAGAAATCAATGTTGCTTTGCATACATGCACGCGTCTTTGGCCTGCTTGCGTGCTAAGGGCAAATATACCATGTTTGCAAGTAATTTAG 2457 0.4058 MVCTANDLQGWKDFPKGLRVLLLQGDNNSASEIRAKLESMDYNVSTFYNENEALSAISSSSKNFHVAVVEVSISCPDGGFKFLENAKDLPTIMTSNSQCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAESSAQSESLKPVKESVESMLQLETDNKLHESTILIDLENVSKTSDNEQEHSAASDKYPAPSTPQLKQGARLVDDGDCHEPTNCSIEKESGEHDGGECKFVETSCENVNAESSPQPTKPLIKEEDDSANGSKGESSVLTNPQSKKLLGDTGGNASPNETSGPKDSCENKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIMHTDEDRKWPNQKNSMQRNYCMQRPIMAYPPYHSNHTFPPAPVYPMWGQPGSQTAGVPIWTPPGYPLWQQPTESWHWKPYPEVHVDAWGNPMLPLHQTPYVPYTQNIAGFHNAKAVDYRFGMPQNSFDDYPAEEVVDKVVKEAITKPWLPLPIGLKPPSMDSVLDELTKQGGGKLKKDNMPFGVCQIFVDKWLVGLEVGTFGYTYYCPMLAKYKTKLPNSISVEKLIIDSISSKTNRKGFWECILKLLNFILTVTGLAMVGYGIYLLVVFSKASDDDTPEISPVSDDSALIQLGRPMLMAVSLSDSIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIGAATRNGCCLVCYSILVALLILVELGCAAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWNIVRWVALGIVIFEVNKKLFDWHLKEINVALHTCTRLWPACVLRANIPCLQVI 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00465 818 Gene3D - 18 149 - -
Tsu05g00465 818 SUPERFAMILY Homeodomain-like 310 368 IPR009057 -
Tsu05g00465 818 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 308 367 IPR017930 -
Tsu05g00465 818 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 543 - -
Tsu05g00465 818 Pfam Tetraspanin family 612 753 IPR018499 GO:0016021
Tsu05g00465 818 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 311 366 IPR006447 GO:0003677
Tsu05g00465 818 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Tsu05g00465 818 SUPERFAMILY CheY-like 16 136 IPR011006 -
Tsu05g00465 818 Pfam Response regulator receiver domain 24 126 IPR001789 GO:0000160
Tsu05g00465 818 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 543 IPR044825 GO:0003700|GO:0045893
Tsu05g00465 818 MobiDBLite consensus disorder prediction 177 205 - -
Tsu05g00465 818 MobiDBLite consensus disorder prediction 246 310 - -
Tsu05g00465 818 Pfam Myb-like DNA-binding domain 314 363 IPR001005 -
Tsu05g00465 818 MobiDBLite consensus disorder prediction 268 301 - -
Tsu05g00465 818 Gene3D - 307 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00465 Tsu-Chr5 3591441 3605097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00465 1 540 Response Regulator Gene Family AT4G18020 49.126 1.31e-135 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu05g00465 Tetraspanin 5.4e-14 CL0347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00465 - - gmx:100784905 851.277