Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00448 ATGGAGGCATGCACCCAAGACTCTGTTCAATCCGCAGAACATGTTAGTAATAACTATGGCACCATTCTTTGGTCACACCCTTTGGTGATTTCTGACCCACATGCATTCGATTGTTGGAATTGCTCTCAGTTCTTGACCATTCCCATCTTtcagTGTATTAATGGTCATAATTTTTGCTCCACCTGCTGTGATAAACTTCAGAAAAAGTGTCACAAATGCTCAAAATGCTTAAGACGTAATAGAGCCTTTGAGAATCTATTGCAATATATCCAAATGTTATGCCCGAATGAAAAATATGGCTGCAGGAAGAGAATGAGATACATGGAAGATAATACTGAAGATAGGAAGCATGTAGAAGAATGCATCTATGTGCCATGTTACTGCCCACTTTCAAGTTGCGACTTTGTTGCCTCATCGGAAGTGTTGTCCAACCATTTCAGCCATAAACACGAGGATTGTCGAATCAAATTTTCTTATGGTCACTCCTTCGTTGTCTCCTTGAAGTCTAATGATGAAATAATGGTGCTTCAAGAGGAAACTGATTCGAAACTATTTGTTCTCAATAATAGTCCTGTGAGTTTGGGAAATGCAATCAACATTAGTTGCATTGGTCCTTACTATCCTGACTCACACTATCATTATAGTATATTGGCTAGGTCCCAAACATGCTCTCTAAAGTTAAAGTCTTTTCCCAAGAACGTCCAACGGGTTACTTTAGCAACTCTTTCATCAAAGTTCCTATTTATTCCATATGATCATTTTGGTTCTTCTGAACTTTTCGAGCTAGAAATTTGCATAATAACCCCCAAGATGCAAATATTCTTAAAGACCTTAACTGGACAGATGATCCCCCTAAGGGTGCACAGTTCAGACACGATAGCCAATGTGAAGTTGCAGATTATGAATAAGGAAGGGTTCCCACCGGACGAACAATTTCTGATACATACTGGTAAGAGACTAGAGGACCATCACACAATTGCCTATTACGACATCCAAGAGAATTCTATCGTCGACTTCGTCCCTAACATAGATAATGAGCTGCTGGAAATATTCATAAAGAACACAGATGGAAAGACATTCCCCCTGAAGGCAGAGAGTTCAGACACAATATCAAATTTGAAGGCAATGATTCaggacaaagaaaaaatccCAGTGGACCAGCAACGTCTGATCTTTGCTGGTAGGCTACTAGATGACTCCCGTACCATCGGCGATTACAACTTCCAATTTGCGACAATCATCCACCTTGTTGTCCGTTGCCGTCCGCAAAAAATATCATGA 1281 0.3958 MEACTQDSVQSAEHVSNNYGTILWSHPLVISDPHAFDCWNCSQFLTIPIFQCINGHNFCSTCCDKLQKKCHKCSKCLRRNRAFENLLQYIQMLCPNEKYGCRKRMRYMEDNTEDRKHVEECIYVPCYCPLSSCDFVASSEVLSNHFSHKHEDCRIKFSYGHSFVVSLKSNDEIMVLQEETDSKLFVLNNSPVSLGNAINISCIGPYYPDSHYHYSILARSQTCSLKLKSFPKNVQRVTLATLSSKFLFIPYDHFGSSELFELEICIITPKMQIFLKTLTGQMIPLRVHSSDTIANVKLQIMNKEGFPPDEQFLIHTGKRLEDHHTIAYYDIQENSIVDFVPNIDNELLEIFIKNTDGKTFPLKAESSDTISNLKAMIQDKEKIPVDQQRLIFAGRLLDDSRTIGDYNFQFATIIHLVVRCRPQKIS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00448 426 ProSiteProfiles Zinc finger SIAH-type profile. 89 151 IPR013010 GO:0008270
Tsu05g00448 426 SUPERFAMILY TRAF domain-like 91 255 - -
Tsu05g00448 426 Pfam Ubiquitin family 273 339 IPR000626 GO:0005515
Tsu05g00448 426 Pfam Ubiquitin family 350 419 IPR000626 GO:0005515
Tsu05g00448 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 146 IPR013083 -
Tsu05g00448 426 Gene3D - 346 426 - -
Tsu05g00448 426 Gene3D - 267 345 - -
Tsu05g00448 426 PRINTS Ubiquitin signature 379 399 IPR019956 -
Tsu05g00448 426 PRINTS Ubiquitin signature 400 421 IPR019956 -
Tsu05g00448 426 PRINTS Ubiquitin signature 358 378 IPR019956 -
Tsu05g00448 426 ProSiteProfiles Ubiquitin domain profile. 348 419 IPR000626 GO:0005515
Tsu05g00448 426 SUPERFAMILY Ubiquitin-like 266 341 IPR029071 -
Tsu05g00448 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 27 268 - -
Tsu05g00448 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 27 268 IPR044286 -
Tsu05g00448 426 ProSiteProfiles Ubiquitin domain profile. 271 340 IPR000626 GO:0005515
Tsu05g00448 426 Pfam Seven in absentia protein family 79 233 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu05g00448 426 ProSitePatterns Ubiquitin domain signature. 374 399 IPR019954 -
Tsu05g00448 426 SUPERFAMILY Ubiquitin-like 345 423 IPR029071 -
Tsu05g00448 426 SMART ubq_7 271 342 IPR000626 GO:0005515
Tsu05g00448 426 SMART ubq_7 348 419 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00448 Tsu-Chr5 3369732 3371663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00448 348 421 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 60.811 1.85e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00448 K04506 - gmx:100778869 203.756