Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00446 ATGAAgtgttttttcttcaaacataaatcaaaatcAGACCCAGATTTAAAccataaaaagaagaaaaatcatgcaaaaaaatcTACTAGTGCTCATTCATCACCAAGGAGTATAAAAGAGTTGTACAAAGAGAAAGAACACAATTTCAGAATTTTTACTCTAAGGGAGCTTATAAATGCAACAAATGGTTTCAATAAGGTGCTGAAAATTGGAGAAGGAGGTTTTGGTAAAGTATATAGAGGAACAATTACTCCTGAAAATGGAATTGGTAACTCAATTGTGGTTGCAATAAAGAAACTCAACACTCGTGGATTTCAGgggcATAAAGAATGGCTTGCAGAAGTACAATTTCTAGGAATTGTGAATCATCCAAATTTggttaagcttttgggatattGTTCTGTAGATGGTAAAAATGGAATCCAACGGTTGTTAGTGTATGAGTTTATGCCTAATAGGAGTTTAGAAGATCATCTTTTCAGTCGTTCTTTACCTCTTTTGCCTTGGAAAACAAGATTACAGATCATGCTTGGTGCTGCTCAAGGATTAAAGTATCTACATGAAGGATTGGAAATTCAGGTGATCTACAGAGATTTCAAATCATCAAATGTGCTGTTGGACAAGGAATTCCATCCTAAGCTCTCAGATTTTGGTCTTGCAAGGGAGGGCCCAACAGGTGACAAGACTCATGTCTCTACTGCGGTAGTTGGGACAAGGGGCTATGCTGCACCAGAGTATATTGAAACAGGTCATCTAAAATCAAAGAGTGACGTTTGGAGTTTTGGTGTAGTATTGTATGAGATTCTCACAGGAAGACGAACAATCGAAAGAAATCTTCCGATGGCAGAACAAAAGCTTATAGAATGGGTTAGAAACTACCCTGCTGATACTGGCAGATTCAGCTTGATTATAGATCCTCGACTCGCGAAACAATATTCTCTTGATTCAGCTAGGAAAATTGCTAAGTTGGCAGATAGTTGCTTAAAGAAGAATGCTGAAGATAGGCCATCAATGAGTCAAGTAGTGGAAAGTTTGAAAGAAGCATTGCaatgttcataa 1059 0.3456 MKCFFFKHKSKSDPDLNHKKKKNHAKKSTSAHSSPRSIKELYKEKEHNFRIFTLRELINATNGFNKVLKIGEGGFGKVYRGTITPENGIGNSIVVAIKKLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGKNGIQRLLVYEFMPNRSLEDHLFSRSLPLLPWKTRLQIMLGAAQGLKYLHEGLEIQVIYRDFKSSNVLLDKEFHPKLSDFGLAREGPTGDKTHVSTAVVGTRGYAAPEYIETGHLKSKSDVWSFGVVLYEILTGRRTIERNLPMAEQKLIEWVRNYPADTGRFSLIIDPRLAKQYSLDSARKIAKLADSCLKKNAEDRPSMSQVVESLKEALQCS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00446 352 ProSiteProfiles Protein kinase domain profile. 64 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00446 352 Gene3D Transferase(Phosphotransferase) domain 1 150 351 - -
Tsu05g00446 352 PIRSF ILK 19 352 - -
Tsu05g00446 352 CDD STKc_IRAK 70 347 - -
Tsu05g00446 352 Pfam Protein kinase domain 65 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00446 352 PANTHER RECEPTOR-LIKE KINASE PLANT 13 350 - -
Tsu05g00446 352 MobiDBLite consensus disorder prediction 8 37 - -
Tsu05g00446 352 ProSitePatterns Protein kinases ATP-binding region signature. 70 99 IPR017441 GO:0005524
Tsu05g00446 352 PANTHER OS01G0588500 PROTEIN-RELATED 13 350 - -
Tsu05g00446 352 SUPERFAMILY Protein kinase-like (PK-like) 46 345 IPR011009 -
Tsu05g00446 352 Gene3D Phosphorylase Kinase; domain 1 43 149 - -
Tsu05g00446 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00446 Tsu-Chr5 3360593 3364120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00446 3 345 Glycoside Hydrolase AT3G07070 42.857 3.36e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu05g00446 Pkinase 4.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00446 - K00924 gmx:100305390 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00446 05 3360593 3364120 Tsu05g00446 05 3360593 3364120 ECH
Tsu05g00446 05 3360593 3364120 Tsu04g02288 04 25560131 25563891 PCT