Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00445 ATGAAATTTATAATAAGCATTTTTCTCGAATTTCTTGTCTTAGGTACCCGATATGGTGCTAGTTTGCGTAAGCAGATTAAGAAGATGGAAGTTAGTCAACACAGCAAATTTTTCTGCGAGTTTTGTGGAAAGTATGCTGTGAAAAGAAAGGCTGTTGGAATATGGGGATGCAAGGATTGTGGGAAAGTGAAAGCAGGAGGTGCCTACACCTTGAATACTGCAAGTGCCGTGACTGTGCGGAGCACTATCCGAAGGTTGAGGGAACAAACTGAGAGTTAA 279 0.4158 MKFIISIFLEFLVLGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00445 92 TIGRFAM eL43_euk_arch: ribosomal protein eL43 15 91 IPR002674 GO:0003735|GO:0005840|GO:0006412
Tsu05g00445 92 Gene3D - 12 92 IPR011331 GO:0003735|GO:0005840|GO:0006412
Tsu05g00445 92 PANTHER 60S RIBOSOMAL PROTEIN L37A-2 14 92 - -
Tsu05g00445 92 Pfam Ribosomal L37ae protein family 15 88 IPR002674 GO:0003735|GO:0005840|GO:0006412
Tsu05g00445 92 PANTHER 60S RIBOSOMAL PROTEIN L37A 14 92 - -
Tsu05g00445 92 SUPERFAMILY Zn-binding ribosomal proteins 15 82 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00445 Tsu-Chr5 3356112 3357875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00445 15 92 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 93.590 1.56e-51 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00445 K02921 - gmx:100305661 162.155