Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00429 ATGAATTTTCAACAACTTCCTCATCTCTTTCAACAAGAGATTCCTAACTTGGCAACTTCAAGTGTAATGAAGGGTATTAAGATGGAAGAAGCTAGATGTGCAcaaatgactattttttatgaTGGGAAAGTGATTGTTCTTGATGATATTCCAGCTGAAAAAGCAAAGGATATTTTGGTCTTTTCTTCCAACAACTATGCTTATCATCATCCTCCCTCATTTCTTGCTGGAAATTCTGCTAATAAGACTGTTCAAGTCCCATCCACAGTACCTATTATTTATGATTTACCAATGACTAGGAAAGCTTCACTTCATCGGTTTTTGGAGAAAAGGAAGAATAGAATTGCTGCAAGGGCACCATATCAAACAACTTATCCAGCAACAAACCTTAATAAGACAATTGATGAATCCATGGCATGGCTCTCCTTGACACCACAATCACCACAACACAAATCTGAGTGTAGCTCCACCTCAGTGTTATTTTAa 486 0.3621 MNFQQLPHLFQQEIPNLATSSVMKGIKMEEARCAQMTIFYDGKVIVLDDIPAEKAKDILVFSSNNYAYHHPPSFLAGNSANKTVQVPSTVPIIYDLPMTRKASLHRFLEKRKNRIAARAPYQTTYPATNLNKTIDESMAWLSLTPQSPQHKSECSSTSVLF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00429 161 PANTHER PROTEIN TIFY 10A 20 144 - -
Tsu05g00429 161 SMART tify_2 29 64 IPR010399 -
Tsu05g00429 161 Pfam tify domain 34 59 IPR010399 -
Tsu05g00429 161 Pfam Jas motif 97 122 IPR018467 -
Tsu05g00429 161 ProSiteProfiles Tify domain profile. 29 64 IPR010399 -
Tsu05g00429 161 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 144 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00429 Tsu-Chr5 3241870 3243829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00429 30 143 Tify Gene Family AT1G19180 39.695 1.35e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tsu05g00429 tify 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00429 K13464 - gmx:100306332 137.117