Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00426 ATGGAGCTTCATTTTAAGCACCAAATTGGTTTAGTTTGTGTCATATTGCTCCTACCTATCATGTGTAACTCTCAAGACTTTATTTGCTCTAGAGCAACTTATTATGGTAGCCCAGATTGTTATGGAAATCCAAAGGGAGCTTGTGGCTATGGCGATTACGGGCAGACAGTAAACGACGGTAATGTCGCCGGTGTGTCCTGGCTGTGGAAGAATGGATCTGGTTGTGGTGCATGCTATCAAGTGAGGTGCAAAATACCACAATTGTGTGATGAGAATGGAGCATATGTGGTGGTGACCGATCATGGTGTGGGAGATAGGACAGATTTTGTCATGAGTCCACGTGGCTATTCAAGATTGGGTATAAATGCTGATGCATCTGCAGAACTTTTCAAATATGGTGTAGTTGATATAGAATATAGAAGAGTCCCTTGCAAATACAATGGTTATAATATCTTGATTAAGGTCCATGAACGCAGCAAAAACCCTCATTACTTGGCCATTATCATTCTCTATGTTGGTGGAACAAATGATATAACTGATGTTCAATTGTGGCAGGAAGATTGCCAAGAGTGGAGACCAATGCGTAGGGTGTTTGGGACAGTGTTTGATGCAGAGAACCCTCCAAGAGGTCCTATAAAGTTGAGGTTACAAGTGAGTGGTAGTGGTGGCCTTTATTGGGTGGAATCCAAGAATGTTATCTCTAGTGATTGGGAAGCTGGGGCTGTTTATGACTCACAAATTCAGTTTGATTAA 753 0.4197 MELHFKHQIGLVCVILLLPIMCNSQDFICSRATYYGSPDCYGNPKGACGYGDYGQTVNDGNVAGVSWLWKNGSGCGACYQVRCKIPQLCDENGAYVVVTDHGVGDRTDFVMSPRGYSRLGINADASAELFKYGVVDIEYRRVPCKYNGYNILIKVHERSKNPHYLAIIILYVGGTNDITDVQLWQEDCQEWRPMRRVFGTVFDAENPPRGPIKLRLQVSGSGGLYWVESKNVISSDWEAGAVYDSQIQFD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00426 250 Gene3D - 20 144 IPR036908 -
Tsu05g00426 250 SUPERFAMILY PHL pollen allergen 150 245 IPR036749 -
Tsu05g00426 250 PANTHER EXPANSIN-B3 4 249 - -
Tsu05g00426 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Tsu05g00426 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Tsu05g00426 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Tsu05g00426 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Tsu05g00426 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Tsu05g00426 250 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
Tsu05g00426 250 Gene3D - 145 246 IPR036749 -
Tsu05g00426 250 Pfam Lytic transglycolase 62 139 IPR009009 -
Tsu05g00426 250 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 249 - -
Tsu05g00426 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Tsu05g00426 250 Pfam Expansin C-terminal domain 153 233 IPR007117 -
Tsu05g00426 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00426 Tsu-Chr5 3223438 3225841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00426 11 247 Expansin Gene Family AT4G17030 60.504 1.01e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00426 - - gmx:100802855 443.736