Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00415 ATGGGCCATTATTGTTGTAAACAAACTAAGCCCAAAATCAATAGAGATAACAAAAAATCGTTGACGGTGCTTTGGTCCTTCCTTTCTCCGCCAGATCTCTTCATCGGCGACGAACAGGAACTCCTTCGCGCTCTCTTTCTCATCTTCgttgaaatttatttatcagagaaaaacaaaatgtgCCGGCAAAATTCTCCGGTGCATAATTCCGGTGATGAAGAACTTGCAGCTGATGAAAGTCTTTTGGTTTATTGCAAACCTGTTGAATTCTACAATATTCTCTATCGTCGTTCTCTTCATAATCCTACTTTTCTTAGGAGATGTTTGCGctataaaataaaagcaaagcGTAAAAGGAGGGTACGAGCAGGAATTGTGATTTTCAACTATAGGGACTGTTACAACATGCTTCGAAAGACTGAAGTGACTGAAGATTTTTCTTGTCCATTTTGCTTGATGCAGTGTGCGAGCTTTAAGGGTTTGCGATTTCATCTTTGTGCATCACATGATCTATTCAACTTTGAGTTCTGGgttACCGATGATTACCAAGCAGTGAACGTCTCTGTAAAAATTGACATATTGAGATCAGAGAATGTTGCTGATGGAGTAATTCCACAAACACAACCCTTCTTCTTCTGTTCAAGACCTCGGAAACGTAGACCAAAAAGCTCTTTTAAAAACCAGAAGCACACCAATATAAAGTTCCTGAAGTTGGATTCACCAGAAGGCATACAAAATGGGACTCTACAGAAAGACGATGATATCCTGTCATGCAAAGGGGAGAATATGTCTAGAGCATCTCATAGTGAGAAGAATTTGCAGAATGAAGGAAATGGTGGGGTAAAATTTGGTCCTGATCATCCTAGCACCATGGATTACGTTGAGCATGTAGAATCTAGTTTTAACATTCCAGGTGTTTCAATTGCCATGCCCCAATCTTCGGAGGACCCTGAATGTAGCAAATCAGTATATAAAAGTGATCCTGCTCTGCCTACTAAAGCAAAGAAGTTAAATACGGACCGTTCAGACTCAAAAAACCGTATGCTCCTGCAGAAGAGGCAGTTCTTTCACTCACATAGGGTTCAGCCCATGGCATTGGACCAAGTGTTATCAGATCGTGATAGTGAGGATGAAGTTGATGATGGCGTTGCTAACCTGGAAGATAGAAGGATGCTTGATGATTTTGTGGATGTTTCCAAAGATGAAAAGCAGCTCATGCATCTCTGGAACTCTTTTATGAGGAAACAAAGGGTACTGGCTGATGGTCATGTTCCGTGGGCTTGTGAGGCATTTTCCAAGCTTCATGCAAAAGAACTGATTTCGTCCCAAGCTTTATTTTGGTGTTGGAGATTATTCATGATCAAACTTTGGAATCATGGTCTGCTTGATGCTTGCACAATGAATAACTGCAATATAGTATTAGATAACTACAAAAATGGGGGATCGGATACTGGTACAAATTGA 1464 0.3941 MGHYCCKQTKPKINRDNKKSLTVLWSFLSPPDLFIGDEQELLRALFLIFVEIYLSEKNKMCRQNSPVHNSGDEELAADESLLVYCKPVEFYNILYRRSLHNPTFLRRCLRYKIKAKRKRRVRAGIVIFNYRDCYNMLRKTEVTEDFSCPFCLMQCASFKGLRFHLCASHDLFNFEFWVTDDYQAVNVSVKIDILRSENVADGVIPQTQPFFFCSRPRKRRPKSSFKNQKHTNIKFLKLDSPEGIQNGTLQKDDDILSCKGENMSRASHSEKNLQNEGNGGVKFGPDHPSTMDYVEHVESSFNIPGVSIAMPQSSEDPECSKSVYKSDPALPTKAKKLNTDRSDSKNRMLLQKRQFFHSHRVQPMALDQVLSDRDSEDEVDDGVANLEDRRMLDDFVDVSKDEKQLMHLWNSFMRKQRVLADGHVPWACEAFSKLHAKELISSQALFWCWRLFMIKLWNHGLLDACTMNNCNIVLDNYKNGGSDTGTN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00415 487 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 60 121 - -
Tsu05g00415 487 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 120 484 - -
Tsu05g00415 487 Pfam VEFS-Box of polycomb protein 337 471 IPR019135 -
Tsu05g00415 487 PANTHER POLYCOMB GROUP PROTEIN 60 121 - -
Tsu05g00415 487 PANTHER POLYCOMB GROUP PROTEIN 120 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00415 Tsu-Chr5 3129019 3136515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00415 120 478 C2H2 Transcription Factor Family AT5G51230 54.039 1.87e-113 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00415 - - mtr:MTR_5g013150 783.867