Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00413 ATGGCTTCTTCCTCTACCCTTTACATAGTTtccattctttttcttcaacttgtgTTAGTCTTTGGAAACGTTACTCGAAGTTCTACACTCACTACcaccaacaataacaacaatccATGGCTATCACAATCTGGTGAATTTGCTTTTGGATTCCAACAACTTAAAACTACAACAAACCTCTTCATGCTTGCAATATGGTACAACAAAATACCTGAAAAAACCATTGTTTGGAGTGCTAAAGacataaacaacaacaacctcgTACAAGCATCGACAGGATCACAGATTCAGTTAACATCAGGTGGACTCACGTTGACAACATCACAAGGTGAATCTATTTGGACAGCACAACCAAATGAAGCTGTTTCCTATGGAAACATGCTTGACAGTGGAAACTTTGTTCTTGTAAACAAGAATTCTACTATTGTTTGGGAAAGTTTCATGTTTCCTACTGATACCCTTTTGCCTAATCAATCTCTTGAGTTAAATGGAACCTTAACTTCAAGATTATCAGAGACTAATTACACAAGTGGAAGGTTTCAACTttattttaatgatgatgataataatcaTGTTATGTTAAGTCCACTTGCATGGCCTACTCAATTACGTTACAAATTTTACTATAGAATTGATGTTCCTAATAGTTCTGCTTCTTCAAGTTTAGTTTTTGATGAATCAGGAGAAATTTATGTGGAAACAAATAATAATGGTACTAGAGTGAAACCTGAGGGTACACAATGGAAGAATTTAGTTCTTGATCCTAAGTTGTATTATTATAGAGTAACACTAGATTATCATGGAGTTTTCACACAATATTCTCATCCAAGAGATACTAAAGCAAAACAAGGATGGACTATTGTAAGGTATGTTCCTGATAACATTTGTATTGCTATATTCAATGAAATGGGTAGTGGAACTTGTGGATATAATAGCTATTGTTCCATGGAAAATCAAAGACCTACTTGTAAATGTCCTTATGGTTATTCATTGATTGATTCAAGTAATGAATTTGGTGGGTGCCAACTCAATTTCACATTTGCTTGTGGAACTGATAATGGTGAAGGATTGAATGTGAAGCTAGAAGATTTATATGAGTTCACTGTTCTTAAAGATGTGGATTGGCCTTTATCAGATTATGAAAAGATGCAGCCTTATGGTCAACAGGATTGTCAACAATCTTGTTTGCATGATTGCATGTGTGCTGTTGCTATTTTCAATAACAAAACTTGTTGGAAGAAAAGATTGCCTCTTTCTAATGGAAGAGCACAAAGTGGTGGTCAATTAGTACTTGTGAAAACAAGAGTTTCTCCTCTTAGTAGCCTTGGTCTTGGTCCTTCGTGTTCATCTGATTTGAATAAAGATGATGGAGTTAAGCCGATTCTTCGAGGTTTGCTTATTGGTTCAACTGTCTTTAATAGCATACTCTTGGCTTTGGTTGTTTTTGTGACTTTGTGGAAGCCGAAAAGGGTTGTCCAAGCTGTAACTCTAGTGGAAAcaaatttatgtttgtttaGTTACGAGGCGTTAAAAGAAGCTACATGGGGTTTTAGTGAAGAACTAGGTAGAGGTTCCTTTGGAATTGTTTATAAAGGTGAATTAAAAGCAGCAGCATCTTGTAATGCTGTTGCTGTTAAGAGATTGGATCGGTTAGCGCAAGATCGTGAGAAGGAATTTAAGACCGAGTTGAGAGCCATTGGTAAAACCTGCCACAAAAACTTGGTAAGGTTGATTGGATATTGTGATGAAGGAATGCATAGAATGTTGGTGTATGAGTTCATGAGCAATGGTAGTCTTGCAGATATCTTGTTTGGACAAACCAAACCTATTTGGAATCAAAGGATTGGATTTGCGCTGGGGATTGCAAGAGGGTTGGTGTATTTACATGAAGAGTGTGATACTCCCATCATTCATTGTGACATAAAGCCTCAAAATATACTCATAGATGAGTACTTCACGGCAAAGATATCTGATTTTGGATTGGCCAAGTTGTTGTTGGCTGATCAAAGTCGAACGAATACCATGATCCGAGGAACGCGTGGATATGTAGCTCCTGAATGGTTCAAGAATGTTCCTGTGACAGCTAAAGTGGATGTTTACAGCTTTGGTTCCATGTTGTTGGAAATCATTTGCTGCAGAAAAAGTGTGGTGCTGATGGAGTCAGGGGAGGAAGAGAAGGCAATTTTGACAAATTGGGTTTGTGATTGCTACATGGAAGGGAGAATAGATGTTCTTGTGGAGAATGATCATGAGGCCTTGGAAGACATTGGAAGGTTAGAAAAGTGGATAAAGATAGCAATTTGGTGCATTCAAGAGCATCCTGAAATGAGGCCAACAATGAGGATGGTCATGCAAATGCTAGAAGGTGTGGTTCAAGTCCCTAACCCACCATCGCCTTTTTCCTTCAGTTCGATTGCTTGA 2421 0.3635 MASSSTLYIVSILFLQLVLVFGNVTRSSTLTTTNNNNNPWLSQSGEFAFGFQQLKTTTNLFMLAIWYNKIPEKTIVWSAKDINNNNLVQASTGSQIQLTSGGLTLTTSQGESIWTAQPNEAVSYGNMLDSGNFVLVNKNSTIVWESFMFPTDTLLPNQSLELNGTLTSRLSETNYTSGRFQLYFNDDDNNHVMLSPLAWPTQLRYKFYYRIDVPNSSASSSLVFDESGEIYVETNNNGTRVKPEGTQWKNLVLDPKLYYYRVTLDYHGVFTQYSHPRDTKAKQGWTIVRYVPDNICIAIFNEMGSGTCGYNSYCSMENQRPTCKCPYGYSLIDSSNEFGGCQLNFTFACGTDNGEGLNVKLEDLYEFTVLKDVDWPLSDYEKMQPYGQQDCQQSCLHDCMCAVAIFNNKTCWKKRLPLSNGRAQSGGQLVLVKTRVSPLSSLGLGPSCSSDLNKDDGVKPILRGLLIGSTVFNSILLALVVFVTLWKPKRVVQAVTLVETNLCLFSYEALKEATWGFSEELGRGSFGIVYKGELKAAASCNAVAVKRLDRLAQDREKEFKTELRAIGKTCHKNLVRLIGYCDEGMHRMLVYEFMSNGSLADILFGQTKPIWNQRIGFALGIARGLVYLHEECDTPIIHCDIKPQNILIDEYFTAKISDFGLAKLLLADQSRTNTMIRGTRGYVAPEWFKNVPVTAKVDVYSFGSMLLEIICCRKSVVLMESGEEEKAILTNWVCDCYMEGRIDVLVENDHEALEDIGRLEKWIKIAIWCIQEHPEMRPTMRMVMQMLEGVVQVPNPPSPFSFSSIA 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00413 806 Gene3D - 150 282 IPR036426 -
Tsu05g00413 806 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 804 - -
Tsu05g00413 806 Pfam PAN-like domain 366 412 IPR003609 -
Tsu05g00413 806 ProSiteProfiles Protein kinase domain profile. 515 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00413 806 SMART serkin_6 515 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00413 806 Pfam Protein kinase domain 518 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00413 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Tsu05g00413 806 Pfam D-mannose binding lectin 74 164 IPR001480 -
Tsu05g00413 806 Gene3D Phosphorylase Kinase; domain 1 482 593 - -
Tsu05g00413 806 SUPERFAMILY Protein kinase-like (PK-like) 500 788 IPR011009 -
Tsu05g00413 806 SMART blect_4 31 150 IPR001480 -
Tsu05g00413 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 201 IPR036426 -
Tsu05g00413 806 Gene3D Transferase(Phosphotransferase) domain 1 594 793 - -
Tsu05g00413 806 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Tsu05g00413 806 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 804 - -
Tsu05g00413 806 ProSitePatterns Protein kinases ATP-binding region signature. 521 546 IPR017441 GO:0005524
Tsu05g00413 806 Gene3D - 26 149 IPR036426 -
Tsu05g00413 806 PIRSF SRK 1 806 IPR024171 GO:0004674
Tsu05g00413 806 CDD STKc_IRAK 521 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00413 Tsu-Chr5 3122486 3124906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00413 475 792 Receptor kinase-like Gene Family AT5G45780 41.337 5.92e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu05g00413 Pkinase 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00413 - - gmx:100775269 1044.26