Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00412 atgtaCGAAGAAAGTACTTATGAATCGGATGTGGCTTTTTTAGAGTCGATTCGGATTCACTTACTCGGAGATTCCGATGTTTTTACATTTGGAGCTCCGTTTAATGCTCCAGTTTACTGTCGGAGCTCAAGCTTCAACAACCTTAATCCATGTTTGAGTGAAAATTGGGGAGAACTTCCACTGAAAGAAGATGATTCAGATGATATGGTGCTTTACGGTGTTCTTCGTGATGCCGTTAATGTTGGGTGGGTTCCATCTCTCGATGCAGGCTCACCGGAGAGTTATTCTTCGTCTGGTTTAATGCCGGCGACGATTGTTAAATCGGAGCCGGAAGTCCAGAGTTCGTCTGAGATGATTGTTTCAACTCCGGTGGATGTGCCGGTGAAGGGGAAGCATTATAGGGGAGTGAGACGGCGGCCGTGGGGGAAATTTGCGGCGGAGATACGTGATCCCGCTAAAAATGGGGCGCGGGTTTGGCTTGGAACATTTGGAACAGCTGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTATAGGATGCGTGGCTCAAAGGCTATGTTGAATTTTCCGCTTCGGGTTAATTCCGGTGAACCGGAACCGGTTAGAGTGCGGTCGAAGCGATTTTCTTCTTCATCGGAGTGTGGATTGTTGGTGAAACGGAGGAAGAAGGTGGTGGGTGCAACCGTGGATTGA 693 0.4805 MYEESTYESDVAFLESIRIHLLGDSDVFTFGAPFNAPVYCRSSSFNNLNPCLSENWGELPLKEDDSDDMVLYGVLRDAVNVGWVPSLDAGSPESYSSSGLMPATIVKSEPEVQSSSEMIVSTPVDVPVKGKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTFGTAEDAALAYDRAAYRMRGSKAMLNFPLRVNSGEPEPVRVRSKRFSSSSECGLLVKRRKKVVGATVD 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00412 230 PANTHER BNAANNG21280D PROTEIN 23 227 - -
Tsu05g00412 230 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Tsu05g00412 230 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Tsu05g00412 230 SUPERFAMILY DNA-binding domain 132 192 IPR016177 GO:0003677
Tsu05g00412 230 Pfam AP2 domain 132 182 IPR001471 GO:0003700|GO:0006355
Tsu05g00412 230 PANTHER DNA-BINDING DOMAIN 23 227 IPR044808 GO:0003700|GO:0009873
Tsu05g00412 230 SMART rav1_2 132 196 IPR001471 GO:0003700|GO:0006355
Tsu05g00412 230 CDD AP2 131 190 IPR001471 GO:0003700|GO:0006355
Tsu05g00412 230 Gene3D AP2/ERF domain 131 193 IPR036955 GO:0003700|GO:0006355
Tsu05g00412 230 ProSiteProfiles AP2/ERF domain profile. 132 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00412 Tsu-Chr5 3119727 3120859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00412 8 230 AP2-EREBP Transcription Factor Family AT4G17500 52.800 4.50e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g00412 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00412 K09286 - gmx:100819649 304.293