Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00405 ATGGAGCAAGTTTCTGTCCCAATAGACAACGAAATTGAACTAACCACTTCAATCTCTTCCTCCTTTGAAGATAACAAAACCAAACCCAAAAGTGATAATGGTGGGAAACACCCTTTGTATCGCGGAGTACGAATGCGTCAATGGGGTAAATGGGTTTCCGAAATTAGAGAGCCCAAGAAAAAATCAAGAATTTGGCTCGGTTCTTTTCCAACACCCGAAATGGCAGCTCGAGCCCATGATGTTGCGGCCCAAGCCATCAAAGGAAGTTCGGCTTACCTTAATTTCCCCGAATTAGCCGAATACCTTCCACGTCCCGCCAGCAATTCTCCAAAGGACATTCAAGCCGCCGCCACTAAAGCAGCTTCGATGGACTTTCCTCATGAAGCCCAGGCCCAAGCCCATGACTTACAAGAATCGTCAAATTCATCTTTAACTGACGAGGATGACACGTTCTATAACTTGCCGGATCTCTTACTCGATACAAATAACACTTCAACAACTGAATTATATTATTCTTCAATGCCGTGGCTCGTGGCCGGAGCTGAATATTCAAACTCGGGTTTTGGGCTGGATGAGCCTTTACCATGGGAGTCTTATTAA 600 0.4517 MEQVSVPIDNEIELTTSISSSFEDNKTKPKSDNGGKHPLYRGVRMRQWGKWVSEIREPKKKSRIWLGSFPTPEMAARAHDVAAQAIKGSSAYLNFPELAEYLPRPASNSPKDIQAAATKAASMDFPHEAQAQAHDLQESSNSSLTDEDDTFYNLPDLLLDTNNTSTTELYYSSMPWLVAGAEYSNSGFGLDEPLPWESY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00405 199 MobiDBLite consensus disorder prediction 17 40 - -
Tsu05g00405 199 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Tsu05g00405 199 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Tsu05g00405 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 24 181 - -
Tsu05g00405 199 MobiDBLite consensus disorder prediction 25 39 - -
Tsu05g00405 199 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Tsu05g00405 199 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Tsu05g00405 199 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Tsu05g00405 199 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Tsu05g00405 199 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Tsu05g00405 199 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Tsu05g00405 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00405 Tsu-Chr5 3034094 3034693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00405 28 194 AP2-EREBP Transcription Factor Family AT2G44940 47.115 6.60e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g00405 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00405 - - gmx:100812293 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00405 05 3034094 3034693 Tsu04g02356 04 26386806 26387702 PCT