LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g00403	ATGTCAGGCGAAGAAGAGGTTGTTGCTGCAGTTGAGCCTGTTGTTGCTGCTGTAGTTCCAGGTGAGCCAATGGACATCATGACTGCTGTGCAGCTTGTGCTTAGAAAGTCACGGGCTTATGGCGGTCTTGCAAGAGGTCTTCATGAAGGTGCAAAAGCAATTGAGAAGCATGCTGCACAGCTTTGTGTTCTAGCTGAAGATTGTGACCAACCTGATTATGTCAAACTGGTCAAAGCCCTTTGCGCTGAACATAATGTTAGCCTGTTGACAGTTCCAAATGCTAAGACCCTTGGAGAATGGGCTGGTCTGTGCAAGATTGATTCAGAAGGTAAAGCTAGGAAGGTTACCGGTTGCTCTTGCGTGGTTGTCAGGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTTTGCAGCATGTGAAAGCTAACTGA	432	0.4676	MSGEEEVVAAVEPVVAAVVPGEPMDIMTAVQLVLRKSRAYGGLARGLHEGAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVRDFGEEHEAYNVVLQHVKAN	143

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g00403	143	PANTHER	40S RIBOSOMAL PROTEIN S12	1	142	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Tsu05g00403	143	Gene3D	-	6	143	IPR029064	-
	Tsu05g00403	143	PANTHER	40S RIBOSOMAL PROTEIN S12	1	142	-	-
	Tsu05g00403	143	SUPERFAMILY	L30e-like	23	141	IPR029064	-
	Tsu05g00403	143	PRINTS	Ribosomal protein S12E family signature	33	46	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Tsu05g00403	143	PRINTS	Ribosomal protein S12E family signature	47	63	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Tsu05g00403	143	PRINTS	Ribosomal protein S12E family signature	88	109	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Tsu05g00403	143	PRINTS	Ribosomal protein S12E family signature	113	126	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Tsu05g00403	143	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	29	122	IPR004038	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g00403	Tsu-Chr5	3014385	3015983	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g00403	22	143	Cytoplasmic Ribosomal Protein Gene Family	AT2G32060	72.951	7.55e-66	195

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g00403	K02951		-	gmx:100500093	251.906