Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00389 ATGGAGGGGTACAAATGCAAGCTTTGCACAAGAACATTAGCCAGTAGTAGAGCATTGGGTGGACACATGAAGGCTCATTTAGCCATCCTCcgtcttcctcctcctccttctcCTCCCTCCGAAGATGAACAATCCAAGCGAAACCGAATACTCACCTTTGGCCAAAACTCAGAACAAAAGAAACTTAAAGAGAGTTTTTTAGATTCACATTCACCACTAACTGAAACTGAACCAGAACAGGTTAGTTCAATTTCTGATACTTCCCCTGAAGAAGAAGTTGCTATAACCCTCATGTTGCTATCAAGAGAtaaatggaagaagaagaacaatgTTGTTGACAAAGAAAAAGCAGAAGAAGTTGAAAGATCAATGGGATTAATGGAAGAGATTAAGCTCAAAAAAGTTAGTGGGAAGCAAAAATGTGACAAATGTAGGAATAACTTTGGAAGTTCTAGGGCGTTGGAAAGTCACAAAATCATTTGCCTTCAAAATGAAGCAAATCTGGTTGCAACTAGTAGTACTGATCATAAAATATTCCAGTGTAAGATTTGTTTAAAGGTTTTTGGGTCTGGTCAAGCATTAGGTGGTCACAAAAGATCTCACTTTTATCCACCTTTGAAGAAAAAACTCTGTTTCTTTGATCTCAACATGCCACCTTTATCCGAAGAAGACGGTCCTAGTGTTCTTTCCGATGCATAG 699 0.3619 MEGYKCKLCTRTLASSRALGGHMKAHLAILRLPPPPSPPSEDEQSKRNRILTFGQNSEQKKLKESFLDSHSPLTETEPEQVSSISDTSPEEEVAITLMLLSRDKWKKKNNVVDKEKAEEVERSMGLMEEIKLKKVSGKQKCDKCRNNFGSSRALESHKIICLQNEANLVATSSTDHKIFQCKICLKVFGSGQALGGHKRSHFYPPLKKKLCFFDLNMPPLSEEDGPSVLSDA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00389 232 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 37 - -
Tsu05g00389 232 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 43 232 - -
Tsu05g00389 232 SUPERFAMILY beta-beta-alpha zinc fingers 4 201 IPR036236 -
Tsu05g00389 232 MobiDBLite consensus disorder prediction 53 88 - -
Tsu05g00389 232 Pfam C2H2-type zinc finger 4 28 - -
Tsu05g00389 232 Pfam C2H2-type zinc finger 179 201 - -
Tsu05g00389 232 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Tsu05g00389 232 Gene3D Classic Zinc Finger 137 201 - -
Tsu05g00389 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Tsu05g00389 232 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Tsu05g00389 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 201 IPR013087 -
Tsu05g00389 232 MobiDBLite consensus disorder prediction 71 88 - -
Tsu05g00389 232 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 37 IPR044303 GO:0006355
Tsu05g00389 232 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 43 232 IPR044303 GO:0006355
Tsu05g00389 232 SMART c2h2final6 4 26 IPR013087 -
Tsu05g00389 232 SMART c2h2final6 139 159 IPR013087 -
Tsu05g00389 232 SMART c2h2final6 179 201 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00389 Tsu-Chr5 2917131 2917829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00389 1 229 C2H2 Transcription Factor Family AT3G60580 32.302 1.81e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g00389 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00389 - - mtr:MTR_5g012630 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00389 05 2917131 2917829 Tsu04g02371 04 26547187 26548395 PCT