Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00359 ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCTGCATTCTCTTCCGGTGACTTCACAACCGCAATTCGTCACTTCTCTGAAGCTATCGATCTTTCCCCTAACAACCATGTCCTTTATTCAAACCGATCCGCAGCTTACGCTTCTCTTCAGAAATACTCCGATGCTTTAACCGACGCTAAGAAAACCGTCGAACTCAAACCTGATTGGTCAAAAGGCTATAGTCGTCTTGGCGCGGCTCATCTTGGTTTATCTCAATTTGACGATGCTGTTTCTGCTTATCAAAAAGGTCTTGAAATTGATCCTAATAATGAGCCTTTGAAATCAGGTTTAGCCGATGCAAAGAAAGCCGCGGCTTCTTCGGCTAGGTCACGTTCTGCGCCGGCCAATCCTTTTGGTGATGCTTtttctggtccagagatgtggGCTAAGCTTACAGCTGATCCTACAACTAGGGTTTATCTTCAACAACCTGATTTTGTTAAGATGATGCAAGATATTCAAAAGGATCCAAATAATCTTAATTTGTATTTGAAGGATCAAAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTTAAGATTAAAAGCCctggtgatgatgttgatatGCCGGATACTTCTTCaccttcatcttcctcttctgAGAGGAAGAGGGCAGCTGAAGCTGAGCCTCCTAAGCAGCCTGAGCCGGAACCTGAACCGGAACCAATGGAAGAAGTGGCTGATgaggaaaaagagaagaagCAGAGGAAGGCTGAGGCACAGAAAGAAAAGGAGGCTGGTAATGCAGCGTATAAGAAGAAGGATTTCGATACTGCTATTCAACATTACACAAAAGCTTTGGAATTGGATGATGAGGATGTGTCTTTCCTCACTAACCGTGCTGCTGTATACTTGGAGATGGGAAAGTATGAGGATTGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGAAGAGAACTACGATCAGATTACAAGATGATAGCAAGAGCTTTGACAAGGAAGGGAACTGCCATGAGCAAAACGGCAAAATCCTCTAAAGATTATGAACCTGTCATTGAGACTTATCAAAAAGCACTTACAGAGCACCGCAACCCGGATACCCTGAAGAAACTTAATGAAGCTGAAAAGGCTAAGAAAGAACTTGAACAACAAGAATACTATGATCCAAAATTGGCCGATGAGGAAAGAGAAAAAGGGAATGATTACTTTAAGCAGCAGAAGTATCCTGAAGCTATTAAGCATTACACAGAGTCTCTAAAAAGAAACCCAAAAGATCATAGGGCTTATAGTAACAGAGCTGCATGTTACACCAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAATGCATTGAGCTCGAACCAACCTTCACCAAGGGTTATACCCGTAAAGGTGCTGTTCAGTATTTCATGAAAGAATATGAAAAGGCTTTGGAAACATACAAAGAGGGGTTGAAACATGACCCCAACAACCAGGAGTTGCTTGATGGGATTACAAAGTGTGTACAACAAATTAACAGAACCAGTCGTGGAGATGTAACTCCTGAAGAGTTGAAGGAGAGACAGGCCAAGGCAATGTCAGATCCAGAGATACAGAACATCCTTCAAGACCCTGTTATGAGAcagGTATTGGTTGATTTCCAAGAAAATCCTAAGGCTGCACAGGAACATACCAAGAACCCTGGTGTGATGGACAAGATCCAAAAGCTTATCAGTGCTGGAATTGTCCAGATGAAGTAA 1749 0.4077 MADEAKAKGNAAFSSGDFTTAIRHFSEAIDLSPNNHVLYSNRSAAYASLQKYSDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQFDDAVSAYQKGLEIDPNNEPLKSGLADAKKAAASSARSRSAPANPFGDAFSGPEMWAKLTADPTTRVYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKIKSPGDDVDMPDTSSPSSSSSERKRAAEAEPPKQPEPEPEPEPMEEVADEEKEKKQRKAEAQKEKEAGNAAYKKKDFDTAIQHYTKALELDDEDVSFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDYKMIARALTRKGTAMSKTAKSSKDYEPVIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYYDPKLADEEREKGNDYFKQQKYPEAIKHYTESLKRNPKDHRAYSNRAACYTKLGAMPEGLKDAEKCIELEPTFTKGYTRKGAVQYFMKEYEKALETYKEGLKHDPNNQELLDGITKCVQQINRTSRGDVTPEELKERQAKAMSDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00359 582 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Tsu05g00359 582 Gene3D - 511 582 - -
Tsu05g00359 582 SUPERFAMILY TPR-like 8 507 IPR011990 GO:0005515
Tsu05g00359 582 SMART CBM 137 176 IPR006636 -
Tsu05g00359 582 SMART CBM 531 570 IPR006636 -
Tsu05g00359 582 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Tsu05g00359 582 Gene3D Tetratricopeptide repeat domain 251 387 IPR011990 GO:0005515
Tsu05g00359 582 Gene3D Tetratricopeptide repeat domain 391 506 IPR011990 GO:0005515
Tsu05g00359 582 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Tsu05g00359 582 PANTHER TPR REPEAT CONTAINING PROTEIN 1 581 IPR045248 GO:0006457|GO:0030544|GO:0051879
Tsu05g00359 582 Pfam STI1 domain 523 574 IPR041243 -
Tsu05g00359 582 Pfam STI1 domain 138 191 IPR041243 -
Tsu05g00359 582 ProSiteProfiles TPR repeat profile. 461 494 IPR019734 GO:0005515
Tsu05g00359 582 MobiDBLite consensus disorder prediction 195 263 - -
Tsu05g00359 582 MobiDBLite consensus disorder prediction 216 233 - -
Tsu05g00359 582 Coils Coil 237 260 - -
Tsu05g00359 582 Gene3D - 127 195 - -
Tsu05g00359 582 Pfam Tetratricopeptide repeat 7 61 - -
Tsu05g00359 582 Coils Coil 365 385 - -
Tsu05g00359 582 MobiDBLite consensus disorder prediction 241 263 - -
Tsu05g00359 582 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Tsu05g00359 582 Pfam Tetratricopeptide repeat 462 494 IPR001440 GO:0005515
Tsu05g00359 582 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Tsu05g00359 582 ProSiteProfiles TPR repeat profile. 393 426 IPR019734 GO:0005515
Tsu05g00359 582 Pfam TPR repeat 400 441 - -
Tsu05g00359 582 Pfam TPR repeat 261 302 - -
Tsu05g00359 582 ProSiteProfiles TPR repeat profile. 254 287 IPR019734 GO:0005515
Tsu05g00359 582 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 581 - -
Tsu05g00359 582 SMART tpr_5 393 426 IPR019734 GO:0005515
Tsu05g00359 582 SMART tpr_5 254 287 IPR019734 GO:0005515
Tsu05g00359 582 SMART tpr_5 288 321 IPR019734 GO:0005515
Tsu05g00359 582 SMART tpr_5 427 460 IPR019734 GO:0005515
Tsu05g00359 582 SMART tpr_5 329 366 IPR019734 GO:0005515
Tsu05g00359 582 SMART tpr_5 461 494 IPR019734 GO:0005515
Tsu05g00359 582 SMART tpr_5 70 103 IPR019734 GO:0005515
Tsu05g00359 582 SMART tpr_5 2 35 IPR019734 GO:0005515
Tsu05g00359 582 SMART tpr_5 36 69 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00359 Tsu-Chr5 2671888 2675504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00359 252 335 U-box Gene Family AT3G07370 32.143 5.49e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00359 K09553 - gmx:100816776 906.746