Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00348 ATGATCAATTACTTCCATCTCCTTCTTTCATTGTTTCTGTTGATTGCATTTTCTAAACCAGAAACGGTTTATGGAAATGCAGAGCTAAGAGCTTTGATGGATTTGAAATCTTCTCTTGATCCAGAGGGAAAGATTCTTACTTCATGGATCAGTGATGGTAATCCATGTAGTGGTTCATTTGAAGGGGTTGCTTGTAATGATCATTGGAAAGTGGCTAATATATCTTTGCAAGGAAAGGGACTTTCTGGTTGTTTATCTCCAGCTGTGGCTGAACTCAAATGCTTGTCAGGGTTATACTTGCATTATAACAATCTTTCTGGTGAGATACCATCACAGATTTCAAATCTTACTGAGCTTGTTGATCTTTATCTTGATGTGAATAATCTTTCTGGAACAATTCCTGCTGAGATTGGAAACATGGCCAGTCTACAAGTGCTTCAGTTGGGAGATAATCAGTTGGTGGGTAATATACCTACACAGATGGGTTCCTTGAAGCAGCTTACAACTCTTGCTTTGCAATATAACAAGTTAACCGGTCGAATTCCTATTAGCTTAGGGAACTTGGAGAATCTAAGCAGGCTAAATTTGAGTTTCAACAATTTCAGTGGTACTTTTCCAGCAACACTAGCCAATGTTGCACATTTGGAAGTTCTGGATATCCAACACAATTCTTTATCAGGAACTGTTCCTTCCGCATTGAAGAGACTTGGGGAAGGATTCCAAGGGGCAAACAATCAAGGTTTATGTGGAGTAGATATTTTTACTTTGAGAGCTTGCAACAAGAATTCAGATTTAAACGTCAGCGCCATTGATACCTCTGATCAAGACCACCTTAAAAATGGTAATTCCGCAACGCCTCGCCCAGAAGCTGCAGATTTCCAAATGCATTGTAACCAGACTCATTGCTCAAAATCAAGGTTTCCTTTAAGTGTCGTCACAGCAGCAGGTGTTACAATCACCGCTCTCGCATTCATAGCTGTTGGATTGTTTACATTTGTCAAATACCGCCGTCGAAAGCAGAAGATTACAGCAAACTCTTCCGAAGGGAAACTTAGTCCTCAACAGCCTAAAGAGTTATACAGGAAAAGTCCATCTACCCTTGTTAATCTTGACTATTATAATGGATGTTATCCAATGCCTGATGATCAAAATGCTGGGGGATTATACAGTGAGAATCTAAACAAGTTTAGGTTTAATGTAGATGAAGTCGAATCTGCAACACAATATCTTTCAGAAGCAAATTTATTGTGTAAGAGCAAATTCTCAGCAATGTATAAAGGAATTCTCAGAGACGGTTCTCTTGTTGCTATTAGAAGCATTAACATGACATGCTGCAAAACTGAGGAAGCCGAATTTGTAAAGGGTTTGAGCTTATTAACCTCACTTAGGCATGAAAACGTTGTTAAGCTAAGAGGTTTTTGTTGCTCAAGTAGTAGAGGTGAATGTTACCTTATTTACGACTTTGCAACGATGGGCTACCTATCTCAATACCTTGACATAGAAGATACAAGTGGCCATTTGCTTGACTGGTCCAAGAGGGTTTCTATCATCAAGGGCATTGCAAAGGGTATAGGATATCTGCACAGCGATGAAGCAAGCAAACCTTCAATAGTACACCAGAATATATCAGTGGAGAATGTTCTCCTTGACAAAGAGTTTAATCCATTGATCATGGATGCAGGACTTCCTAAGCTTCTCGCAGACGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACCTAGCTCCTGAATACATTACTACAGGACGCTTTACCGAGAAGAGTGACATATACGCATTTGGAGTTATTGTACTTCAAGTTTTATCTGGCAAGACAGCAATTGGTGGTTCAATACGGACGGCATTCGAGTCTCTCAGATTGGAAGATTGCATCGACACAAATCTTAAGGGAAGATATTCTAGCTCTGAAGCAACAACGCTTACAAAGCTTGCAGTGCAGTGTATCCATGAGAGTCCTGACCAAAGACCAAGCATGGTGGATGTGATTCAGGAGCTAAGGGTGTTTCCGGCTAATTCATAA 2049 0.4012 MINYFHLLLSLFLLIAFSKPETVYGNAELRALMDLKSSLDPEGKILTSWISDGNPCSGSFEGVACNDHWKVANISLQGKGLSGCLSPAVAELKCLSGLYLHYNNLSGEIPSQISNLTELVDLYLDVNNLSGTIPAEIGNMASLQVLQLGDNQLVGNIPTQMGSLKQLTTLALQYNKLTGRIPISLGNLENLSRLNLSFNNFSGTFPATLANVAHLEVLDIQHNSLSGTVPSALKRLGEGFQGANNQGLCGVDIFTLRACNKNSDLNVSAIDTSDQDHLKNGNSATPRPEAADFQMHCNQTHCSKSRFPLSVVTAAGVTITALAFIAVGLFTFVKYRRRKQKITANSSEGKLSPQQPKELYRKSPSTLVNLDYYNGCYPMPDDQNAGGLYSENLNKFRFNVDEVESATQYLSEANLLCKSKFSAMYKGILRDGSLVAIRSINMTCCKTEEAEFVKGLSLLTSLRHENVVKLRGFCCSSSRGECYLIYDFATMGYLSQYLDIEDTSGHLLDWSKRVSIIKGIAKGIGYLHSDEASKPSIVHQNISVENVLLDKEFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRTAFESLRLEDCIDTNLKGRYSSSEATTLTKLAVQCIHESPDQRPSMVDVIQELRVFPANS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00348 682 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Tsu05g00348 682 Gene3D Ribonuclease Inhibitor 181 247 IPR032675 -
Tsu05g00348 682 Gene3D Transferase(Phosphotransferase) domain 1 490 678 - -
Tsu05g00348 682 Pfam Protein tyrosine and serine/threonine kinase 415 675 IPR001245 GO:0004672|GO:0006468
Tsu05g00348 682 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 676 - -
Tsu05g00348 682 Gene3D Phosphorylase Kinase; domain 1 382 488 - -
Tsu05g00348 682 SUPERFAMILY Protein kinase-like (PK-like) 387 676 IPR011009 -
Tsu05g00348 682 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
Tsu05g00348 682 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 676 - -
Tsu05g00348 682 ProSiteProfiles Protein kinase domain profile. 410 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00348 682 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Tsu05g00348 682 SUPERFAMILY L domain-like 28 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00348 Tsu-Chr5 2583023 2586497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00348 7 523 Miscellaneous Gene Families AT4G22730 56.449 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Tsu05g00348 PK_Tyr_Ser-Thr 4.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00348 - - mtr:MTR_5g011840 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00348 05 2583023 2586497 Tsu05g00348 05 2583023 2586497 ECH