Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00338 ATGGATCCAATAACAGCACATGGACACTCACTTCCTCCACCTTTCCACACAGCAAgagatcttcatcttcatcatcaacaccagcagcagcagcagcaacaacaacagcatCATCAATTCCATACTTTACAACAGCAACCAGATCAAGATGAACAAAGCGGAAGCAGTAGCGGAGGCGGCCTCAACCTCACAAACCGCGAAGAAAACAGCCATAACAAGTTCAACACTGATTTTAGCCCGAAATTAGAATCCGGAGGAGGAGGTTCGGGTGGTGACACCGATTCAATGACAAGAAGACCAAGAGGAAGACCAGCTGGAtccaaaaacaaaccaaaaccaccAATCATCATCACACGAGACAGTGCCAACGCGCTAAAAACTCACGTGATGGAAGTTGCAGACGGTTGTGATGTGGTTGAAAGTGTTAACAACTTTGCTAGACGCCGTCAAAGAGGCGTCTGTATCATGAGTGGGACTGGAACAGTCACAAACGTTACGCTAAGGCAGCCTGCATCGCCTGGAGCGGTAGTTACTCTCCATGGAAGGTTTGAGATTCTTTCGCTGGCTGGATCGTTTCTTCCACCACCTGCTCCGCCCGCTGCTTCTGGATTGACAATATATTTAGCGGGCGGACAAGGGCAGGTAGTTGGTGGAAGTGTTGTTGGTGCTTTGATTGCTTCTGGACCAGTTGTTATTATGTCTGCTTCTTTTAGTAACGCTGCTTATGAAAGACTTCCTTTGGAAGAAGATGATGCTTCTTCTTTGCAACAACTTcaaggtggtggtggtggtggttctccaagtggtggtggtggtggtggtgttcaGCAGACACAGCTTTTAGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCCACCTCCTAATCATAATCCTAATGCTAATCTTCTTAATTCTGTTCAAATGccttctgataatttctggcCAACTGGTCGTTCTCCTTATTGA 969 0.3901 MDPITAHGHSLPPPFHTARDLHLHHQHQQQQQQQQQHHQFHTLQQQPDQDEQSGSSSGGGLNLTNREENSHNKFNTDFSPKLESGGGGSGGDTDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEEDDASSLQQLQGGGGGGSPSGGGGGGVQQTQLLGDSTAPLFQAMPPPNHNPNANLLNSVQMPSDNFWPTGRSPY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00338 322 MobiDBLite consensus disorder prediction 295 322 - -
Tsu05g00338 322 MobiDBLite consensus disorder prediction 1 116 - -
Tsu05g00338 322 MobiDBLite consensus disorder prediction 27 79 - -
Tsu05g00338 322 CDD DUF296 126 193 IPR005175 -
Tsu05g00338 322 MobiDBLite consensus disorder prediction 271 285 - -
Tsu05g00338 322 MobiDBLite consensus disorder prediction 250 322 - -
Tsu05g00338 322 Gene3D - 125 259 - -
Tsu05g00338 322 Pfam Plants and Prokaryotes Conserved (PCC) domain 126 239 IPR005175 -
Tsu05g00338 322 PIRSF ESCAROLA 13 322 IPR014476 GO:0003680
Tsu05g00338 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 322 IPR014476 GO:0003680
Tsu05g00338 322 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 255 - -
Tsu05g00338 322 ProSiteProfiles PPC domain profile profile. 122 258 IPR005175 -
Tsu05g00338 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00338 Tsu-Chr5 2488951 2489919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00338 1 322 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.467 1.26e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00338 - - gmx:100781436 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00338 05 2488951 2489919 Tsu05g00338 05 2488951 2489919 ECH