Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00332 ATGAGAACACAGTTTcaaattcatctttctcatgCTCTATTCATTCCCATTCTCTGTTTGTTTTGGTCTATTGCAACTGTTTCACCAGCAACTGAGAAAGAGATTTTACTTCAATTCAAAGGTAACATCACCGAGGATCCATACAATACATTGAGTTCATGGGTTTCAAGTGGAGACCCTTGTCAAGATTACAAAGGTATTTTCTGTAACACAGAAGGATTTGTAGAAAGAATAGTGCTTTGGAACACTAGCTTAGGTGGAGTGTTGTCCCCAGCACTCTCAGGGTTGAAGAGTTTGAGGACATTGACATTGTTTGGGAATCGATTTTCGGGTAATGTCCCTGATGATTATGCTGAACTTAAGTCATTGTGGAAGATCAATGTGAGTTCCAATGCTTTATCCGGTTCGATACCGGATTTTATTGGTGATTTGCCTAATATTCGCTTTCTAGATTTATCAAAGAATGGTTTTATTGGAGAGATACCTTCTGCTTTGTTTAGGTACTGTTACAAAACTAagtttgtttctctttctcataACAATCTTGTTGGTTCAATTCCTTTATCTTTGGTGAATTGCATAAACCTTGAAGGctttgatttttctttcaataatcTTAGTGGTGTTGTCCCTTCTAGAATCTGTGATATTCCTATGTTATCATATGTATCTCTGAGAAGCAATGCCTTATCAGGTAGTGTGAAAGAGCACATTTCTGCATGCCATAGTCTAATGCATTTGGATTTTGGTAGTAATAGATTTACTGATATGGCACCATTTAGCATCCTTGGAATGCAAAATCTTACCTACTTCAATATATCCTATAATGGGTTTGAAGGGCAAATTCCTGATATCACTTCATGTAGTGAGAGATTAGAGATCTTTGATGCTTCAGGGAATAATTTGGATGGGGTGATTCCATCCAGCATAACTAGATGCAAGAACCTAAAACTCTTGTCATTGGAGTTGAATAGGCTGAAGGGGAGTATCCCGGCTGATATTCAGGAATTGCGAGGGCTATTGGTTATCAAACTCGGTAATAACTCGATAGGCGGAATGATTCCTGAGGGGTTCGGCAACATTGAGCTGCTTGAATTGCTGGATTTGAGCAACCTAAACCTCACTGGCGAAATTCCGGTTGACATAACAAATTGCAAGTTTCTTCTTGAGCTGGATGTCTCTGGTAATAACTTAGATGGCGAGATTCCTCTGGCCATTTACAAAATGACAAATCTCGAAGCCCTTGACCTACATTATAACCAGATTACGGGAAGCATCCCATCAATCCTAGGAAACCTATCAAGGATCCAATACCTAGATCTATCACATAATTCACTTTCTGGTTCAATCCCTCCTTCTCTTGGAGATTTAAATAACATGACACATTTTGATCTCTCATTCAACAATCTCTCTGGTGTCATTCCTGATATTGCAACCATACAGCATTTTGGTGCACCAGCCTTTTCCAATAATCCTTTTCTCTGTGGTGCTCCTTTGGAAACCAGTTGCTCAACAAGTGGAACTAGATCATCGTCTTCACCTCTGGGGAAGACTAAACTTCTCAGCGTCTCTGCAATTATTGCCATTGTTGCTGCAGCTGTCATTCTTACTGGGGTTTGTTTGGTGACCATCATGAGCATTAGAGCCCGACGTAGAAAAAAAGACGATGATCAGATTATGATTGTTGATGAGAGTACACCTCTAGGATCAAGATCAACAGAATCAAATGTTATAATTGGAAAGTTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGCACTAAAGCATTGCTTGATAAAGAGTCTTTGATAGGTGGTGGATCGATTGGTACAGTCTACAAAACCAATTTTGAAGGTGGCATCTCAATTGCAGTGAAGAAACTTGAGACTCTGGGAAGGATCAGAAATCAGGAGGAATTCGAAAACGAAATCGGGCGACTAGGTAACATTCAACACCATAATTTGGTTGCCTTTCAAGGTTACTACTGGTCCTCTTCAATGCAGTTGATTTTGTCAGAGTTTGTTTCAAACGGGAATCTTTATGATAATCTACATGGCCATGGTTATCCTGGAACAAGCACAAGTAGAGGCAATAGGGAATTAGATTGGTCTAGAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCCCTTGCCTATCTCCACCACGACTGTCGACCTCCAATCCTTCACCTCAACCTTAAATCCTCTAATATTCTCTTAGATGACAAGTATGAAGCCAAGTTATCTGATTTTGGATTAGGAAAGTTGTTACCGATTTTGGATAACTACGGTTTGACCAAGTTCCACAACGCTGTTGGTTATGTTGCACCAGAGTTAGCTCAAAGCTTTAGGCAGAGTGAGAAGTGTGATGTTTATAGTTTCGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTAGAAAGTCCAACCACAAGTGAGGTTGTGGTTTTGTGTGAATATGTGAGAAGCCGGTTAGAGACTGGCTCGGCTTCACATTGCTTCGATAGAAATTTACTGGGATTTACTGAAAGTGAATTGATTCAGGTTATGAGATTGGGTATAATATGTACTTCAGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGATTGTTCAGGTCCTTGAATCCATCAGAAATGGATTGGAATCTCATTAA 2679 0.3927 MRTQFQIHLSHALFIPILCLFWSIATVSPATEKEILLQFKGNITEDPYNTLSSWVSSGDPCQDYKGIFCNTEGFVERIVLWNTSLGGVLSPALSGLKSLRTLTLFGNRFSGNVPDDYAELKSLWKINVSSNALSGSIPDFIGDLPNIRFLDLSKNGFIGEIPSALFRYCYKTKFVSLSHNNLVGSIPLSLVNCINLEGFDFSFNNLSGVVPSRICDIPMLSYVSLRSNALSGSVKEHISACHSLMHLDFGSNRFTDMAPFSILGMQNLTYFNISYNGFEGQIPDITSCSERLEIFDASGNNLDGVIPSSITRCKNLKLLSLELNRLKGSIPADIQELRGLLVIKLGNNSIGGMIPEGFGNIELLELLDLSNLNLTGEIPVDITNCKFLLELDVSGNNLDGEIPLAIYKMTNLEALDLHYNQITGSIPSILGNLSRIQYLDLSHNSLSGSIPPSLGDLNNMTHFDLSFNNLSGVIPDIATIQHFGAPAFSNNPFLCGAPLETSCSTSGTRSSSSPLGKTKLLSVSAIIAIVAAAVILTGVCLVTIMSIRARRRKKDDDQIMIVDESTPLGSRSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTNFEGGISIAVKKLETLGRIRNQEEFENEIGRLGNIQHHNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGHGYPGTSTSRGNRELDWSRRFQIALGTARALAYLHHDCRPPILHLNLKSSNILLDDKYEAKLSDFGLGKLLPILDNYGLTKFHNAVGYVAPELAQSFRQSEKCDVYSFGVILLELVTGRKPVESPTTSEVVVLCEYVRSRLETGSASHCFDRNLLGFTESELIQVMRLGIICTSEDPLRRPSMAEIVQVLESIRNGLESH 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00332 892 PANTHER - 12 891 - -
Tsu05g00332 892 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Tsu05g00332 892 ProSiteProfiles Protein kinase domain profile. 604 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00332 892 SUPERFAMILY L domain-like 166 500 - -
Tsu05g00332 892 CDD STKc_IRAK 610 885 - -
Tsu05g00332 892 Pfam Protein tyrosine and serine/threonine kinase 607 882 IPR001245 GO:0004672|GO:0006468
Tsu05g00332 892 ProSiteProfiles Leucine-rich repeat profile. 411 433 IPR001611 GO:0005515
Tsu05g00332 892 Gene3D Ribonuclease Inhibitor 171 506 IPR032675 -
Tsu05g00332 892 SUPERFAMILY L domain-like 77 208 - -
Tsu05g00332 892 Gene3D Phosphorylase Kinase; domain 1 571 680 - -
Tsu05g00332 892 Gene3D Transferase(Phosphotransferase) domain 1 681 891 - -
Tsu05g00332 892 Pfam Leucine rich repeat 411 470 IPR001611 GO:0005515
Tsu05g00332 892 PANTHER UNNAMED PRODUCT 12 891 - -
Tsu05g00332 892 SMART LRR_typ_2 433 457 IPR003591 -
Tsu05g00332 892 SMART LRR_typ_2 144 168 IPR003591 -
Tsu05g00332 892 SMART LRR_typ_2 337 360 IPR003591 -
Tsu05g00332 892 SMART LRR_typ_2 409 432 IPR003591 -
Tsu05g00332 892 SUPERFAMILY Protein kinase-like (PK-like) 605 883 IPR011009 -
Tsu05g00332 892 Gene3D Ribonuclease Inhibitor 29 170 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00332 Tsu-Chr5 2446817 2449583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00332 31 891 Receptor kinase-like Gene Family AT1G62950 65.513 0.0 1116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Tsu05g00332 PK_Tyr_Ser-Thr 8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00332 - - mtr:MTR_5g011410 1574.3