Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu05g00326 | ATGTACACCACAGTCATTCATAGTCTTTGCAAGGATAAACTCATGAGTGATGCTTTTCATTTATATTCTGAAATGATTGTCAAGAAAATTTCTCCTAATGTTGTCACTTACACTAGTTTAATATATGGCCTTTGCGTTGTGGGTCAATTCAAAGAAGCTATTGGTTTGTTAAATGAAATGTTGTTGAAAAACATCAGCCCTAATGTTCTTACTTTTACTACACTGATTGATGGTTTATCTAAGGAAGGAGAGATGACAAAAGCCAGAAATGTCTTAGCTGTTATGATAAAACAAGGTGTGAAACCAAATGTTGTTACATATACTTCTTTAATAGATGGGTATTTCTTGGTTAATGACGTGAACATGGCCAAATATGTATTCAACACTCTTGCTCAAAGGGGAGTGATTCCTAGTGTTAATAGCTACACTGTCATGATTGATGGATTATGCAAGAATAAAATGGTGGATGAAGCTGTGAATCTCTTCAAagaaatgtatttaaaaaacatGTCTCCTGGTACTGTAACATACAGTTCACTTATTGATGGACTTTGCAAATCAGGGAGAATCTCTGATGTTTGGGATCTTCTTGATGAGATGCATGATAGAGGCCAACCTGCTGATGTGATCACTTACAATTCTATATTGGATGCTTTGTTCAAAAACCATCAGGTTGACAAAGCAATTGAATTATTAGCAAAGATCAAAGACCAAGGAATTCAGCTAGATTCGTATACATACACTGTATTTGTCGACGGACTATGCAAAAATGGAAGAATTACGGATGCACTAGAGATTTATCAGGATCTTTTGATTAAAGGCTACCAGTTTAATGTGACGATGTATAATGTTATCATTGATGGGCTTTGTAAAGAGGGCTTGTTTGATGAAGCATTGTCCTTAATGTCAAAAATGGAAGATAACGGTTGCAACCCTGACGGCATAACTTACACAGTTCTTATTCATGCTTTGTCCAAAAATGGCATGAATGAGAAGGTGGTGAAACTTCATCATGAAATGATTGCTAGAGTCTTAGCATATAGCAGCAGCTACAGTCTGTTAATATCAGCCCTGTTATCATTCTGGCTTGTTGGAAAACTCACTGGCATCGTCGAAGGTGCCACTGTCGAGCCCGATACAGGAGCAGTTACCCCAGATGTGGTCGAAACTGACGCTGGAGCAGTTACCCCCATAGTGGTTGAAACTGAAACAGGAGTAGTTGAAACCAATAAacaacgaagagataatgtgACTCCAGCTAGTACTTTTCATATGGGAAAGAGACTTCCTCTCTATGATGGCTGTAAGAGCCTTTATACTGTAGGACTTCTACCTTTCATTTCCAAAGACTTCATATTCACACTCGGAGCACCGAGGAGGAGGGATAGGGAGTTCAAAGGGAGGAAGACTAGGCAGACTGACACTCCTCAAGAAGCTCTCCTGTTTCTTGACAATGTTCTGCGCGGACTCCCTACCACCAGCTATTGTCCCGTGGGGAGATCATTTTATTCTCCTTCTCTTGGTAGAAGACAGCCTTGTGCATTAGTTGACATATTGCTGAGACTTTGCCAGTCATCAACGACATTTATTGAGGCTTTGCCAGTCATCAATTTTATAGAAAAAAGCCTCCGTGGTATCAAAGTGGAAGTAACACATTGCGGGAACATGAGGAGAAAATATCATATTTCTGGTCTGACCTCACAGGCTACTAGTGAGTTGACATTCCCTGTGGATGAGAAGGGAACACGGAATGGGCACTACACAGAACCAAACTATTTACAAATGGAGGTTTGCAAGATAGTAAAAGGCCGACAGAACTCAAAACGCCTCAATGAGAGGCAAATTACTGCTTTGCTAAATGACACATGCCCTTGTCATGTTGTGTCGACCGTTCATCAGAATGCCGATCATGAAGATCCTTATGCTGAAGAGTTTGGAATCAAAATCAGCGAGGAGCTCGATCAAATTGAAGCTCGCATCCTTCCTCCACCTCGGCTCAAATATCATGATAATGGTAAAGAAAAGGATTGTCTACCCCAAGTTGGGCAATGGAATATGAAGAACAAGGAAATGTTAAATGGGGGGTCAGTCTACAAGTGGTTATGCATAAACTTTTCAAATAATGTTGGTGATCCTGATGTCGATTGCTTTTGCTATGAGCTCGCCAAAATGTGTTGGATATCTGGCTTGCCATTTAATCTTGACCCTGTGGTTCCCACATTGAGTGCCCGACCGGAGACCGGATAA | 2247 | 0.3992 | MYTTVIHSLCKDKLMSDAFHLYSEMIVKKISPNVVTYTSLIYGLCVVGQFKEAIGLLNEMLLKNISPNVLTFTTLIDGLSKEGEMTKARNVLAVMIKQGVKPNVVTYTSLIDGYFLVNDVNMAKYVFNTLAQRGVIPSVNSYTVMIDGLCKNKMVDEAVNLFKEMYLKNMSPGTVTYSSLIDGLCKSGRISDVWDLLDEMHDRGQPADVITYNSILDALFKNHQVDKAIELLAKIKDQGIQLDSYTYTVFVDGLCKNGRITDALEIYQDLLIKGYQFNVTMYNVIIDGLCKEGLFDEALSLMSKMEDNGCNPDGITYTVLIHALSKNGMNEKVVKLHHEMIARVLAYSSSYSLLISALLSFWLVGKLTGIVEGATVEPDTGAVTPDVVETDAGAVTPIVVETETGVVETNKQRRDNVTPASTFHMGKRLPLYDGCKSLYTVGLLPFISKDFIFTLGAPRRRDREFKGRKTRQTDTPQEALLFLDNVLRGLPTTSYCPVGRSFYSPSLGRRQPCALVDILLRLCQSSTTFIEALPVINFIEKSLRGIKVEVTHCGNMRRKYHISGLTSQATSELTFPVDEKGTRNGHYTEPNYLQMEVCKIVKGRQNSKRLNERQITALLNDTCPCHVVSTVHQNADHEDPYAEEFGIKISEELDQIEARILPPPRLKYHDNGKEKDCLPQVGQWNMKNKEMLNGGSVYKWLCINFSNNVGDPDVDCFCYELAKMCWISGLPFNLDPVVPTLSARPETG | 748 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu05g00326 | 748 | Pfam | PPR repeat | 1 | 29 | IPR002885 | - | |
| Tsu05g00326 | 748 | Gene3D | - | 660 | 747 | - | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 68 | 102 | IPR002885 | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 103 | 137 | IPR002885 | - | |
| Tsu05g00326 | 748 | Gene3D | Tetratricopeptide repeat domain | 272 | 343 | IPR011990 | GO:0005515 | |
| Tsu05g00326 | 748 | Gene3D | Tetratricopeptide repeat domain | 1 | 62 | IPR011990 | GO:0005515 | |
| Tsu05g00326 | 748 | Gene3D | Tetratricopeptide repeat domain | 203 | 271 | IPR011990 | GO:0005515 | |
| Tsu05g00326 | 748 | Gene3D | Tetratricopeptide repeat domain | 63 | 130 | IPR011990 | GO:0005515 | |
| Tsu05g00326 | 748 | Gene3D | Tetratricopeptide repeat domain | 131 | 202 | IPR011990 | GO:0005515 | |
| Tsu05g00326 | 748 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 1 | 271 | - | - | |
| Tsu05g00326 | 748 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 137 | 359 | - | - | |
| Tsu05g00326 | 748 | Pfam | Argonaute linker 2 domain | 633 | 668 | IPR032472 | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1 | 32 | IPR002885 | - | |
| Tsu05g00326 | 748 | SUPERFAMILY | PAZ domain | 527 | 623 | IPR036085 | GO:0005515 | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 138 | 172 | IPR002885 | - | |
| Tsu05g00326 | 748 | Pfam | PPR repeat | 99 | 128 | IPR002885 | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | PAZ domain profile. | 538 | 592 | IPR003100 | GO:0005515 | |
| Tsu05g00326 | 748 | Pfam | PPR repeat family | 137 | 186 | IPR002885 | - | |
| Tsu05g00326 | 748 | Pfam | PPR repeat family | 278 | 326 | IPR002885 | - | |
| Tsu05g00326 | 748 | Pfam | PPR repeat family | 208 | 256 | IPR002885 | - | |
| Tsu05g00326 | 748 | Pfam | PPR repeat family | 33 | 81 | IPR002885 | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 278 | 312 | IPR002885 | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 208 | 242 | IPR002885 | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 173 | 207 | IPR002885 | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 33 | 67 | IPR002885 | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 313 | 343 | IPR002885 | - | |
| Tsu05g00326 | 748 | SUPERFAMILY | HCP-like | 44 | 307 | - | - | |
| Tsu05g00326 | 748 | CDD | PAZ_argonaute_like | 539 | 601 | - | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 141 | 173 | IPR002885 | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 71 | 104 | IPR002885 | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 281 | 313 | IPR002885 | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 35 | 69 | IPR002885 | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 175 | 206 | IPR002885 | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 105 | 138 | IPR002885 | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 315 | 343 | IPR002885 | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 245 | 277 | IPR002885 | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 210 | 243 | IPR002885 | - | |
| Tsu05g00326 | 748 | TIGRFAM | PPR: pentatricopeptide repeat domain | 1 | 34 | IPR002885 | - | |
| Tsu05g00326 | 748 | Gene3D | paz domain | 534 | 588 | - | - | |
| Tsu05g00326 | 748 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 243 | 277 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu05g00326 | Tsu-Chr5 | 2422453 | 2426833 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu05g00326 | 424 | 746 | Eukaryotic Initiation Factors Gene Family | AT1G48410 | 48.551 | 6.50e-108 | 351 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu05g00326 | K11593 | - | cam:101506267 | 476.092 |