Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00315 ATGCAAGAACCAAGCTTGGGAATGATGCACGGTGCTGCTGGTGGTTACGGTGGAGATGGCGGTGGTGGTGATAACCGACAGCTGAAAGCTGAGATAGCAACACATCCTCTTTATGAACAACTTCTTTCTGCACATGTAGCATGTCTTCGTGTTGCTACTCCTATAGATCAGTTACCATTGATTGATGCACAGTTATCTCAATCTCATCATCTTCTACGATCTTATATCTCTCAACAAACTCATTCTCTTTCTCCTCATGATCGTCAACAACTAGACAACTTCCTCGCACAATATTTGATAGTGTTATGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTTCATGCCGTTGAAGCTGTCATGGCTTGCCGTGATATTGAAAATACCTTGCAAGCTCTCACTGGAGTGAGTTTGGGAGAAGGAAGTGGTGCGACGATgtctgatgatgaagatgaacaaATGCAGATGGATTATTGTTTAGATAATAATCAGTCTGGCAGTGGTGATCACGACATGATGGGTCTTGGTCCATTACTTCCGACTGAATCTGAAAGGTCGCTCATGGAACGAGTTCGTCAAGAACTCAAAATTGAGCTCAAACAGGGTTTTAAGTCTCGAATTGAAGATGTACGCGAGGAAATATTAAGGAAAAGAAGAGCTGGGAAATTACCAGGCGACACAACTTCTGTCTTAAAGAATTGGTGGCAGCAACATGCAAAATGGCCTTATCCAACTGAAGATGACAAAGCAAAACTAGTTGAGGAAACGGGGCTGCAGCTGAAGCAAATCAATAACTGGTTCATAAACCAAAGGAAACGAAACTGGCATAGCAATTCTCAATCTGTTACCTCTTTGAAGTCGAAACGCAAGAGGTAG 879 0.4164 MQEPSLGMMHGAAGGYGGDGGGGDNRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQMQMDYCLDNNQSGSGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00315 292 SUPERFAMILY Homeodomain-like 217 282 IPR009057 -
Tsu05g00315 292 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g00315 292 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Tsu05g00315 292 SMART HOX_1 217 282 IPR001356 GO:0003677
Tsu05g00315 292 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 292 - -
Tsu05g00315 292 ProSiteProfiles 'Homeobox' domain profile. 215 278 IPR001356 GO:0003677
Tsu05g00315 292 Pfam KNOX1 domain 28 69 IPR005540 GO:0003677|GO:0005634
Tsu05g00315 292 Pfam Homeobox KN domain 235 274 IPR008422 GO:0003677|GO:0006355
Tsu05g00315 292 Coils Coil 283 292 - -
Tsu05g00315 292 ProSiteProfiles ELK domain profile. 195 215 IPR005539 GO:0003677
Tsu05g00315 292 CDD homeodomain 218 279 IPR001356 GO:0003677
Tsu05g00315 292 Gene3D - 214 288 - -
Tsu05g00315 292 Pfam KNOX2 domain 84 135 IPR005541 GO:0003677|GO:0005634
Tsu05g00315 292 SMART KNOX2_2 81 136 IPR005541 GO:0003677|GO:0005634
Tsu05g00315 292 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00315 Tsu-Chr5 2352498 2359428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00315 1 291 Homeobox Transcription Factor Family AT1G62990 78.840 1.03e-168 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tsu05g00315 KNOX2 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00315 - - gmx:100808872 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00315 05 2352498 2359428 Tsu05g00315 05 2352498 2359428 ECH