Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00309 ATGGattttttcatgtcattatCTGACGAATACTCGGACACTTCTTCATCAGAAACAACTTCTGCAAACTGTATAAGTTCTAATTCAGAAGTGATTTTGGCATCTACTAAGCCAAAAAAACAAGCAGGGAGAAGAGTGTTTAAGGAAACAAGACATCCTGTGTACCGAGGAGTACGAAGAAGGAACAATAACAAATGGGTTTGTGAGATGAGAattccaaacaaaaacaacaaaagtaatAAGTCAAGAATTTGGCTTGGAACATATCCAACACCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAAGGAAAATCAGCTTGTCTTAATTTTGCTGATTCGGCGTGGAGGTTGAGGTTGCCGGAGTCGAATGACGCAGTGGAGATAAGGAGAGCGGCAATGGAGGCTGCTAAGTTGTTTGCAGTTGAAGATGAAGTGGTTGTGGATGATGATATGGAAGATTCAAAAAAGAAGGTATTGAATGTACAAGTTCCGGTGGTGGCGTCTGAATATGAAGAGTTGCATGATTTGCTTTTGAGTATTGCTAATGAGCCTTTACGTTCACCTCCTCCTTCCATGAATGATTACTGGGGTGATATGGAAATATTTGACACTCAAATTTCATTGTGGAACTTCTCAATTTGA 657 0.3836 MDFFMSLSDEYSDTSSSETTSANCISSNSEVILASTKPKKQAGRRVFKETRHPVYRGVRRRNNNKWVCEMRIPNKNNKSNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLRLPESNDAVEIRRAAMEAAKLFAVEDEVVVDDDMEDSKKKVLNVQVPVVASEYEELHDLLLSIANEPLRSPPPSMNDYWGDMEIFDTQISLWNFSI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00309 218 SMART rav1_2 54 122 IPR001471 GO:0003700|GO:0006355
Tsu05g00309 218 Pfam AP2 domain 53 108 IPR001471 GO:0003700|GO:0006355
Tsu05g00309 218 Gene3D AP2/ERF domain 54 117 IPR036955 GO:0003700|GO:0006355
Tsu05g00309 218 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tsu05g00309 218 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Tsu05g00309 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 218 IPR045277 GO:0003700
Tsu05g00309 218 ProSiteProfiles AP2/ERF domain profile. 54 116 IPR001471 GO:0003700|GO:0006355
Tsu05g00309 218 CDD AP2 55 118 IPR001471 GO:0003700|GO:0006355
Tsu05g00309 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 218 - -
Tsu05g00309 218 SUPERFAMILY DNA-binding domain 54 118 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00309 Tsu-Chr5 2297574 2298436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00309 27 216 AP2-EREBP Transcription Factor Family AT1G12610 46.919 9.69e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g00309 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00309 - - mtr:MTR_5g010940 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00309 05 2297574 2298436 Tsu05g00309 05 2297574 2298436 ECH
Tsu04g02476 04 27964866 27965455 Tsu05g00309 05 2297574 2298436 PCT