Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00308 ATGTCCTCATTTAGTGAATACTCAGACACTTCTTCTTCTGAAACAAGTTCATCAAACTGTATAAGTTCTAATTCAGAAGTGATTTTGGCATCTGCTaagccaaagaagaaagctGGGAGAAGAGTGTTTAAGGAAACAAGACATCCTGTGTACCGAGGAGTACGAAgaagaaacaataacaaatgggTTTGTGAGATGAGAattccaaacaaaaacaacaaaagtaatAAGTCAAGAATTTGGCTTGGAACATATACAACACCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAGGGAAAATCAGCTTGTCTTAATTTTGCTGATTCGGCGTGGAGGTTGAGGTTGCCGGAGTCGAATGACGCAGTGGAGATAAGGAGAGCGGCAATGGAGGCTGCTAAGTTGTTTGCAGTTGAAGATGAAGTGGTTGTGGATGATGATATGGAAGATTCAAAAAAGAATGTACTGCAAGTACAAATTCCGGCCGTGTGGTCGAAATTTGAAGACTTCAATGATTTGCTTTTGAGTATTGCCAATGAGCCTTTACGTTCACTTCCTACTTCCCCAACAAACTATTTTGGTACTAGTAACTGGGGAGACATGGAAATGTCTGATACTCAAGTTTCACTATGGAACTTCTCAATTTGA 660 0.3697 MSSFSEYSDTSSSETSSSNCISSNSEVILASAKPKKKAGRRVFKETRHPVYRGVRRRNNNKWVCEMRIPNKNNKSNKSRIWLGTYTTPEMAARAHDVAALTLKGKSACLNFADSAWRLRLPESNDAVEIRRAAMEAAKLFAVEDEVVVDDDMEDSKKNVLQVQIPAVWSKFEDFNDLLLSIANEPLRSLPTSPTNYFGTSNWGDMEMSDTQVSLWNFSI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00308 219 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Tsu05g00308 219 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Tsu05g00308 219 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g00308 219 Gene3D AP2/ERF domain 50 113 IPR036955 GO:0003700|GO:0006355
Tsu05g00308 219 CDD AP2 51 114 IPR001471 GO:0003700|GO:0006355
Tsu05g00308 219 ProSiteProfiles AP2/ERF domain profile. 50 112 IPR001471 GO:0003700|GO:0006355
Tsu05g00308 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 219 - -
Tsu05g00308 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 219 IPR045277 GO:0003700
Tsu05g00308 219 SUPERFAMILY DNA-binding domain 50 114 IPR016177 GO:0003677
Tsu05g00308 219 SMART rav1_2 50 118 IPR001471 GO:0003700|GO:0006355
Tsu05g00308 219 Pfam AP2 domain 49 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00308 Tsu-Chr5 2294821 2295480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00308 24 217 AP2-EREBP Transcription Factor Family AT1G12610 46.190 4.97e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g00308 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00308 - - mtr:MTR_5g010940 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04476 01 52428738 52429738 Tsu05g00308 05 2294821 2295480 ECH
Tsu05g00308 05 2294821 2295480 Tsu05g00308 05 2294821 2295480 ECH