Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00306 ATGTCATCATTTGGTGAATACTCTGACACTTCTTCTTCTGAAATAAGTTCTTCAAACCGTATAAGTTCTTCAGAAGTGATTTTGGCGTCTTCTAAGCCAAAGAAGAAAGCAGGGAGAAGAGTGTTTAACGAAACAAGACATCCTGTGTACCGAGGAGTACGAAgaagaaacaataacaaatgggTTTGTGAGATGAGAGTTCCTAATTgcaataacaaaaatattaagtCAAGGATTTGGCTCGGATCATATCCAACACCAGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAAGGAAAATCAGCTTGTCTTAATTTTGCTGACTCGGCGTGGAGGTTAAGGTTGCCGGAGTCCAATGATGCAGTGGAGATACGGAGGGCGGCAATGGAGGCAGCTAAGTTGTTTGGGGTTGAAGATGGAGTGGTTGTGCATGATGATATGGAAGATTGCAAAAAGAATGTATTGGATGTACAAATTCCGGCGGTGTCGTCAGAATTTGAAAACTTTAATGATTTGCTTTTGAGTATTGCCAATGAGCCATTACGTTCACTTCCTACATCCCCAACAAATTATGGTGGTACTAGTAATTGGAGCGACATGGAAATGTTTGATACTCAAGTTTCACTATGGAACTTCTCAATTTGA 657 0.3881 MSSFGEYSDTSSSEISSSNRISSSEVILASSKPKKKAGRRVFNETRHPVYRGVRRRNNNKWVCEMRVPNCNNKNIKSRIWLGSYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLRLPESNDAVEIRRAAMEAAKLFGVEDGVVVHDDMEDCKKNVLDVQIPAVSSEFENFNDLLLSIANEPLRSLPTSPTNYGGTSNWSDMEMFDTQVSLWNFSI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00306 218 CDD AP2 50 113 IPR001471 GO:0003700|GO:0006355
Tsu05g00306 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 218 - -
Tsu05g00306 218 Gene3D AP2/ERF domain 49 112 IPR036955 GO:0003700|GO:0006355
Tsu05g00306 218 Pfam AP2 domain 48 103 IPR001471 GO:0003700|GO:0006355
Tsu05g00306 218 SUPERFAMILY DNA-binding domain 49 113 IPR016177 GO:0003677
Tsu05g00306 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 218 IPR045277 GO:0003700
Tsu05g00306 218 SMART rav1_2 49 117 IPR001471 GO:0003700|GO:0006355
Tsu05g00306 218 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Tsu05g00306 218 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Tsu05g00306 218 ProSiteProfiles AP2/ERF domain profile. 49 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00306 Tsu-Chr5 2290782 2291468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00306 21 216 AP2-EREBP Transcription Factor Family AT1G12610 44.907 5.91e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g00306 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00306 - - mtr:MTR_5g010940 320.857