Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00300 ATGGCTTTGACAGTTGCTAATGTTAATATGTTTTCAAACATTGACGAAATTAATCCTGATAGAGCAACTTGGAACTTTAGGGCTAAGATCATAAGACTTTGGGAAGTTTCTGATTTCAATCGAACTAATGTGTCTTTTTCAATTGAAATGGTCTTAATGGATTCTATTGGTGGTAGGATTCATGCAAGTATTAAAAAAACTCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTTTCAATTGAAATGGTCTTAATGGATTCTATTGGTGGTAGGATTCATGCAAGTATTAAAGAAACTCCGATTTACAAATTTAAGAATGACTTAATTGAGGGTAAAgtttattgttttgaaaatcTGGGTGTGGCAAGTAACGTTGGAGCTTATCGTACTACGCACCACCCTTATAAGCTTAACTTTCAGTTTAGCTCTTTAGTTCAAAGGCTTTCCAATTTTCAGATACTTAGATCTCCATTTGCCTTTGTTCCAATTTCTGAAGTTGTTGGTGGCAGTTATGACACTAATTTCTTAGTTGATGTGATTGGTTTCTTGACCGGTGTTGGTCAAGAACGTGAGATCACTAATCAAAATGGTACTTCAACAAAGCTGAATGTCATGGAGTTGGAAGCTGATGGGCATAAGTTGCAGTGTACTCTTTTTGGACAATATGTTGATGAACTTAATACCTTTATTGGAGCTGGTGATGTTAACAATGCTGTAGTAATTGTACAGTTTGCTAAGGCAAAGACTTTTCAAGACAAAATTCATATCCAGAACTGCATGAAttgttctgttttgatttttaaccCAACATGTCCAGAAAGTGTTAACTTAAGGGCAAGTCTCAGTGATGCTGTTGAGATTCTTTCTCCAATGCCCTTAACTCAATTCAATGTTGAACCAAGAGTTCAACCAATTGATGAGTTTATGTACAATACTCCAAGGATGACCTTGCAAGGTCTCAAAGAAGCTACAAGTGAATCATTGAATGTTGTTCTTGCTACCGTGAAAAGGATTTTAAATCCGGATAGTTATTATTATACTGCATGTATGTGTTCTAAGGCTGTCATACCAGATTCCCGGATGTTTTATTGTGAAAAGTGTAATAAGCATGTTCAAAAAGTTGTGCCTAgGTTTTGCATCAAAGTTCGAGTCATTGATCATACTGATTCTGCCACTTTAGTTATATTTGATAAAGAAGCAAGTTTGATTTTGAACATGTCTTGTGCTGATATGATACAAGGAGCTGATACTGTTGTTGGTGTTGGAGTTGTGCCACCTCTACTTGAGGGTTTGGTTGAAAAAACATGGCTTTTTAAGGTTGAAGCTAAACCTTCTCATAATCCAAAGTTTGAGCCATCTTATCGCGTTAGAAAGATTTGCACCGATGATGCAATTATTAAGCAGTTTAAGGACAAGTGGGATGCAGAAGATGCCAAGTTTAGGAAAAATAGAAATgaCTTGAGTTGTTTGTCTGGTCAGTGTGACAAAGGGAAGGACTTGATTATTGAGGGAACACCAGTTGGTGTATCCCAAGATTTGATGCTGAAGTTTTCATCTGCTAATGTTAatcttgatgatgatgatactaCTGAGGTTTTTCCAGAGGTAGAAAAAGGTTCAGCTGAGGTTCAAAAGATTGCTGCTGTTGCTGGTGAAAAGGAAACAACCACTGTTTTAGCTGAGGTGAGTGTAACACCTTCAAGTTCAGTTAAGCCTCCTTCTGGTAGACGGAAGAAATCAGCTAAGAGAGTGTCACCTCAGCATGAAGacaatgatgaagatgaaaatgCTCCTATGAAGTTGTTGAAGAGGGCTGTGAAGATTGAAAAGTTACCCTAG 1863 0.3484 MALTVANVNMFSNIDEINPDRATWNFRAKIIRLWEVSDFNRTNVSFSIEMVLMDSIGGRIHASIKKTLXXXXXXXXXXXXXXXXPFSIEMVLMDSIGGRIHASIKETPIYKFKNDLIEGKVYCFENLGVASNVGAYRTTHHPYKLNFQFSSLVQRLSNFQILRSPFAFVPISEVVGGSYDTNFLVDVIGFLTGVGQEREITNQNGTSTKLNVMELEADGHKLQCTLFGQYVDELNTFIGAGDVNNAVVIVQFAKAKTFQDKIHIQNCMNCSVLIFNPTCPESVNLRASLSDAVEILSPMPLTQFNVEPRVQPIDEFMYNTPRMTLQGLKEATSESLNVVLATVKRILNPDSYYYTACMCSKAVIPDSRMFYCEKCNKHVQKVVPRFCIKVRVIDHTDSATLVIFDKEASLILNMSCADMIQGADTVVGVGVVPPLLEGLVEKTWLFKVEAKPSHNPKFEPSYRVRKICTDDAIIKQFKDKWDAEDAKFRKNRNDLSCLSGQCDKGKDLIIEGTPVGVSQDLMLKFSSANVNLDDDDTTEVFPEVEKGSAEVQKIAAVAGEKETTTVLAEVSVTPSSSVKPPSGRRKKSAKRVSPQHEDNDEDENAPMKLLKRAVKIEKLP 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00300 620 Gene3D - 9 73 IPR012340 -
Tsu05g00300 620 CDD RPA1_DBD_C 339 467 IPR013955 -
Tsu05g00300 620 Pfam Domain of unknown function DUF223 89 184 IPR003871 -
Tsu05g00300 620 MobiDBLite consensus disorder prediction 568 582 - -
Tsu05g00300 620 Gene3D - 161 294 IPR012340 -
Tsu05g00300 620 CDD RPA1_DBD_B_like 186 281 - -
Tsu05g00300 620 SUPERFAMILY Nucleic acid-binding proteins 166 290 IPR012340 -
Tsu05g00300 620 PANTHER REPLICATION FACTOR A 1, RFA1 28 74 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu05g00300 620 PANTHER REPLICATION FACTOR A 1, RFA1 84 420 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu05g00300 620 Pfam Replication factor-A C terminal domain 341 424 IPR013955 -
Tsu05g00300 620 SUPERFAMILY Nucleic acid-binding proteins 328 469 IPR012340 -
Tsu05g00300 620 MobiDBLite consensus disorder prediction 568 620 - -
Tsu05g00300 620 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 74 - -
Tsu05g00300 620 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 84 420 - -
Tsu05g00300 620 MobiDBLite consensus disorder prediction 591 620 - -
Tsu05g00300 620 Gene3D - 83 158 IPR012340 -
Tsu05g00300 620 SUPERFAMILY Nucleic acid-binding proteins 88 158 IPR012340 -
Tsu05g00300 620 Gene3D - 315 475 IPR012340 -
Tsu05g00300 620 CDD RPA1_DBD_A_like 85 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00300 Tsu-Chr5 2220745 2223679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00300 86 448 Core DNA Replication Machinery Family AT5G08020 26.371 6.43e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00300 - - mtr:MTR_4g036240 544.658