Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00299 ATGGGCGGCgaggagagagaaaattgtGCGTATCAAATTCTAGTGGATCGGCTTCGAATTTTGGAGGAGAAACAAGCCTTGCTGACGGAACAGTTCAGTGAATTGTTGCAGGAGAAGAAGCTCAAGGTCAAAGATAAGGAATATTCAACCGCTGATTTTCTTTCTGGTTTCTTCTTCTCTCGAAGTCCTTatgctaaaattttgaaatgcaCGGGGATCTCTGTTTATGTTCATAGTGTTTCCTCCGGCGAGATCACATACTGGAATAATGCAGCAGAAACTCTATATGGATGGAAGGAGCATGAAGTAATTGGACGAAGAATAGCTGATTTCCTAGTTGCTGAGGAATATTATTTACCTCTGCGAAAAATTCTACAACAGTTGATCACAGGAGTGCCATGGTCTGGACAGTTTCCTTTCAAGAAGAGGTCTGGTGAAATATTTATGGCAATGGTAACAAAAACTCCTCTTTACGAGGATGGTGTGCTTGTTGGTATTATTAGTGTTTCTAGTGATGCAGCTGTAGTTAACTCCAAGGATTACGTCAATGGAAGAACTTGCCAATCTCGTGCGAATGGCCAACCTGGAATTCAAAGGTTAAAAAGGGTTCAATGGCCTCCACGCCCGCAAATTGCATCATCTGTTTCCAATCTGGCATCAAAGTTTCTTCCACTCCAGCGTACAGATGATTCTGTTTCCAAGAACACTTCAACAGATTCAGATGATGAAAAACAAGGGAAGCCTAGGACTTATgAAACTGAATCTCGTTCCAGAAGtcaccaaaaagaaaacacaactGTCCGAGAGGCCAGCACGAAGGATGAGTCTACAACTGAACTTAGTCAACCTtctaaaattGCAGCTAAAGTCCTTTCTAAGTTTCGAATGGGAGGAAGTGGAAAATGTAGGAAGGATGCTGGAAGTACTAAAGACAATTGCGCAACTGATGATGATTCAGAAAGTAATAGAGTGAATAATGAAAATGCTTTATCTGGAAGTTCAGTTGCATTAACCTGGCACCAGGATATTTCTAATGGAcaagataaagaagaaaatatcCAAAAATGTAATTCTTCATTTATTGTGAATATTGCAGATGCAAAATTTTCTGCACATAGATCTTCTAGTGTTTTCAAAGATAGTTCTGCTATACCTTTCTCAGAGAACTATTGTAAATGTTCTGGTTCTTCCTTTCCCCAAGACCCTTTAAGATTACACTGTTCTTTCGATCCAAAGAAATTGGAGCCTAAAGCTACAAATTTGGTAATAGAAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGCCGTTGGTGAGCTCGAAGGAGAGTACAGGTGGCCATGCGATTTCATTAAGCAAAGGGAAAAGTGAATCAAACTCTGTTGTAGAGTGTGAAATCCAATGGAAAGACCTTCAATTAAGAAAGGAGATTGGGCAagGTTCTTATGCTATTGTTTATCATGGAATTTGGAATGCATCGGATGTTGCCGTCAAGGTTTACTTTGCAAATGGATACACAGAGGAAACTTTACAAGACTACAAAAAAGAgGTTGATATAATGAAAAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAATATATTCTCAGGAAAAGCATGCCATAGTGACAGAATTATTACCTAGGGGAAGCCTTTTCAGAACACTTCACAAGAATAATCAAACATTTGACATCAGACGGCATCTTAAAATGGCTCTTGATGTTGCCAGAGGAATGAATTATCTTCACCACAGAAATCCACCAATTGTGCATAGAGACCTAAAGTCTTCTAACCTGCTTGTTGATAAAAACTGGAATGTCAAGGTTGGAGACTTTGGCCTTTCGAAGTTGAAGGATGCAACTTTACTGACTACCAAATACGGGAGAGGCACGCCTCAATGGATGGCCCCTGAAGTCCTCCGCAGTGAACCTTCAAATGAAAAGTCTGATGTGTTCAGTTATGGTGTCGTCCTTTGGGAAATAATGACTCAATCTATTCCATGGAAAGATTTGAATTCCCTACAGGTTGTTGGAATAGTAGGCTTTATGGACAGAAGACTGGACCTGCCGGAGGGGCTTGACCCCCATGTCGCGTCAATCATAAACGACTGCTGGCAAAGTGATCCACAGCAACGGCCTTCGTTTGAAGATCTGATACAGAGAATGATGTTGGCTATCAGCAGAGTAACTTTGTCATTAAATGGAATTGCAGAATCCTGA 2220 0.3928 MGGEERENCAYQILVDRLRILEEKQALLTEQFSELLQEKKLKVKDKEYSTADFLSGFFFSRSPYAKILKCTGISVYVHSVSSGEITYWNNAAETLYGWKEHEVIGRRIADFLVAEEYYLPLRKILQQLITGVPWSGQFPFKKRSGEIFMAMVTKTPLYEDGVLVGIISVSSDAAVVNSKDYVNGRTCQSRANGQPGIQRLKRVQWPPRPQIASSVSNLASKFLPLQRTDDSVSKNTSTDSDDEKQGKPRTYETESRSRSHQKENTTVREASTKDESTTELSQPSKIAAKVLSKFRMGGSGKCRKDAGSTKDNCATDDDSESNRVNNENALSGSSVALTWHQDISNGQDKEENIQKCNSSFIVNIADAKFSAHRSSSVFKDSSAIPFSENYCKCSGSSFPQDPLRLHCSFDPKKLEPKATNLVIEDEVQKQQEGLPLVSSKESTGGHAISLSKGKSESNSVVECEIQWKDLQLRKEIGQGSYAIVYHGIWNASDVAVKVYFANGYTEETLQDYKKEVDIMKRLRHPNVLLFMGAIYSQEKHAIVTELLPRGSLFRTLHKNNQTFDIRRHLKMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKDATLLTTKYGRGTPQWMAPEVLRSEPSNEKSDVFSYGVVLWEIMTQSIPWKDLNSLQVVGIVGFMDRRLDLPEGLDPHVASIINDCWQSDPQQRPSFEDLIQRMMLAISRVTLSLNGIAES 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00299 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Tsu05g00299 739 MobiDBLite consensus disorder prediction 226 284 - -
Tsu05g00299 739 ProSiteProfiles PAS repeat profile. 60 132 IPR000014 -
Tsu05g00299 739 MobiDBLite consensus disorder prediction 297 324 - -
Tsu05g00299 739 SUPERFAMILY Protein kinase-like (PK-like) 459 726 IPR011009 -
Tsu05g00299 739 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 172 IPR035965 -
Tsu05g00299 739 SMART pas_2 62 130 IPR000014 -
Tsu05g00299 739 PANTHER SERINE-THREONINE PROTEIN KINASE 14 726 - -
Tsu05g00299 739 Pfam PAS domain 80 172 IPR000014 -
Tsu05g00299 739 ProSiteProfiles Protein kinase domain profile. 470 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00299 739 SMART serkin_6 470 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00299 739 CDD PAS 83 172 IPR000014 -
Tsu05g00299 739 Gene3D Transferase(Phosphotransferase) domain 1 548 732 - -
Tsu05g00299 739 TIGRFAM sensory_box: PAS domain S-box protein 81 172 IPR000014 -
Tsu05g00299 739 ProSitePatterns Protein kinases ATP-binding region signature. 476 497 IPR017441 GO:0005524
Tsu05g00299 739 MobiDBLite consensus disorder prediction 298 323 - -
Tsu05g00299 739 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 14 726 - -
Tsu05g00299 739 CDD STKc_MAP3K-like 476 722 - -
Tsu05g00299 739 MobiDBLite consensus disorder prediction 234 275 - -
Tsu05g00299 739 Pfam Protein tyrosine and serine/threonine kinase 470 721 IPR001245 GO:0004672|GO:0006468
Tsu05g00299 739 PRINTS Tyrosine kinase catalytic domain signature 649 671 IPR001245 GO:0004672|GO:0006468
Tsu05g00299 739 PRINTS Tyrosine kinase catalytic domain signature 630 640 IPR001245 GO:0004672|GO:0006468
Tsu05g00299 739 PRINTS Tyrosine kinase catalytic domain signature 693 715 IPR001245 GO:0004672|GO:0006468
Tsu05g00299 739 PRINTS Tyrosine kinase catalytic domain signature 583 601 IPR001245 GO:0004672|GO:0006468
Tsu05g00299 739 PRINTS Tyrosine kinase catalytic domain signature 544 557 IPR001245 GO:0004672|GO:0006468
Tsu05g00299 739 Gene3D PAS domain 77 176 - -
Tsu05g00299 739 Coils Coil 18 38 - -
Tsu05g00299 739 Gene3D Phosphorylase Kinase; domain 1 463 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00299 Tsu-Chr5 2192368 2199329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00299 1 723 MAP Kinase Kinase Kinase AT4G23050 43.041 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Tsu05g00299 PK_Tyr_Ser-Thr 4.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00299 - - gmx:100813707 1031.94