Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00297 ATGTCGACGACGAACCGTTCAACAGAAGACATCGTCGATTCAACTCCGTTTCTACCAAATTCCAACGGCTCCTCCGACGAAATCAACTCCGGTCGCCGCGTTCGTCGACAGAGACTTCTCCAAGCGGCGAGATTCCTCCGACAAGCAAGCGGACGACGAATGATGCGAGAACCATCAGTCGTTGTTCGAGAAACAGCGGCGGAGCAATTGGAAGAAAGACAAAGCGATTGGGCGTATTCAAAACCTGTTGTGATTCTTGATATCGTTTGGAATTTCGCTTTCGTTGTTGTAGCTGCAACTGCTTTGTTTCTGAGTTTGAATGAATCGCCGGAGATGCCTTTGAGGCTGTGGATTGCGGGATATGTTTTGCAATGTGTTCTTCATatggtttgtgtttgttttgagTATAGAAGACGGAGAAGGTTTCAACGTTCTTCGTCTTCGAATGCAGTTGCAGGTTCTGATAGAGTTGGTGGTGTAAGTAGTGGGAATTTGAGTTCTGGTTCGAGAGAAGGTTCTCGTTCTGTTTCTGTTTCTGGTTCAAGTTATGTTTCATTGGCTCAATTTGGTGAAGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTTTATCCGAAGATTCTCCTCAGCTTTACTGGTTATGTATAATCTTTCTTGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCCTGTATCATTGGTATCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTTTATGCTGTTGCAGATCAGGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCGCAGAGTTGAAAGTAATGAGAAACAAACTGATAATATTCAAGAACCCGCTGGAGGTATAATGACTGAATGCCAGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGATGATGGAGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATTAATGCGACATGCCCCCTCTGCAAGTATAACATTTTGAAAAGTAGTGACTTCGGTCCAGAGGAAGTGTAG 1176 0.426 MSTTNRSTEDIVDSTPFLPNSNGSSDEINSGRRVRRQRLLQAARFLRQASGRRMMREPSVVVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATALFLSLNESPEMPLRLWIAGYVLQCVLHMVCVCFEYRRRRRFQRSSSSNAVAGSDRVGGVSSGNLSSGSREGSRSVSVSGSSYVSLAQFGEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALSEDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRVESNEKQTDNIQEPAGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSDFGPEEV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00297 391 ProSiteProfiles Zinc finger RING-type profile. 336 377 IPR001841 -
Tsu05g00297 391 CDD RING-H2_RNF111_like 335 379 - -
Tsu05g00297 391 Pfam Ring finger domain 335 377 IPR001841 -
Tsu05g00297 391 SUPERFAMILY RING/U-box 326 383 - -
Tsu05g00297 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 387 IPR013083 -
Tsu05g00297 391 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 391 - -
Tsu05g00297 391 MobiDBLite consensus disorder prediction 149 177 - -
Tsu05g00297 391 SMART ring_2 336 376 IPR001841 -
Tsu05g00297 391 MobiDBLite consensus disorder prediction 1 28 - -
Tsu05g00297 391 PANTHER TARGET OF ERK KINASE MPK-1 3 391 - -
Tsu05g00297 391 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00297 Tsu-Chr5 2182336 2188267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00297 14 385 C3H Transcription Factor Family AT1G68070 46.933 3.74e-117 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00297 - - gmx:100790497 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02486 04 28077247 28086159 Tsu05g00297 05 2182336 2188267 PCT