Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00296 ATGGCGACATTACCGGTGGAGCAAACAGGTGAATCAGCGACGGCGGATTCGCAGAGATCTATTCCGACACCGTTTCTGACGAAAACGTATCAGCTCGTTGATGATCCATCCGTTAATGATTTGATTTCATGGAATGAAGATGGAACGAGTTTCATAGTTTGGAAACCTGCTGAATTCGCTAGAGATTTGCTTCCAAAGTATTTCAAACACAATAACTTCTCCAGTTTCGTTCGTCAACTCAACACCTATgGATTTCGGAAAGTTGTACCTGACCGTTGGGAATTTGCAAATGACGGTTTCCGACGAGGTGAGAAAAATCTACTCCGGGATATACAACGGCGGAAAATAGCGCCGGCGGCAGGAACTGCCATGGCGACAGCAGTGGCTGCGGCTAATACTGTAACGGTAGCTATGGCGGCACCGGTGAGAATGGTGTCTCCAACAACTTCCGGTGACGAGCAAGTAGTTTCGTCGAATTCATCTCCGATTGTGGCGCACAATAATACTACAGTGCACCGTGGCACAAGTTGCACCACTGCGCCTGAGTTATTTGAAGAGAATGAAAGGCTTAAGAAAGAGAATATGCAACTGAGTAGTGAGTTGAGTCAATTGAGAGGTCTTTGTAATAATATACTGTCAATGATGAGTAATTATGCTTCTGGTTTTAGTGGACAGTTAGAATCTTCAACTAGCGCCGCAACGGCACGAGCTGTGCTTGTAAAGGAAGCAAAAGCCTTGGAGCTTTTGCCAAGGAGTGTTTTGTTAGCCGAGGAACCTGTGTCGGTTAATGCAGGTGGCGTGGCCGGTAGCGTGCCATGTGAAATGACGAATTTGGTGGAACCTGAGATTCGGGCACCTAAGGTTCCCAAGTTGTTTGGGGTTTCTATTGGACTTAAACGATATAGGACGGAGAGTGAGGCTGAACCGGAAAGAGAGGTACGAGTAAGGGAACAACATCAAATGCAATTGCAAATGCAAACACAATCCTCGCAAGAACCTGATCAAGGATCAGATGAGAAATCTGAATCGCTAGATGGTGATGACTCGGATGATCAAGAGCACCGTTGGAATATGATGAAGTAG 1083 0.4608 MATLPVEQTGESATADSQRSIPTPFLTKTYQLVDDPSVNDLISWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKIAPAAGTAMATAVAAANTVTVAMAAPVRMVSPTTSGDEQVVSSNSSPIVAHNNTTVHRGTSCTTAPELFEENERLKKENMQLSSELSQLRGLCNNILSMMSNYASGFSGQLESSTSAATARAVLVKEAKALELLPRSVLLAEEPVSVNAGGVAGSVPCEMTNLVEPEIRAPKVPKLFGVSIGLKRYRTESEAEPEREVRVREQHQMQLQMQTQSSQEPDQGSDEKSESLDGDDSDDQEHRWNMMK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00296 360 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00296 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 343 IPR027725 -
Tsu05g00296 360 MobiDBLite consensus disorder prediction 303 318 - -
Tsu05g00296 360 MobiDBLite consensus disorder prediction 319 334 - -
Tsu05g00296 360 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00296 360 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 9 343 - -
Tsu05g00296 360 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00296 360 Gene3D - 17 115 IPR036388 -
Tsu05g00296 360 Coils Coil 180 207 - -
Tsu05g00296 360 MobiDBLite consensus disorder prediction 335 360 - -
Tsu05g00296 360 MobiDBLite consensus disorder prediction 303 360 - -
Tsu05g00296 360 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00296 360 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00296 360 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g00296 360 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00296 Tsu-Chr5 2178785 2180850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00296 16 356 HSF AT4G11660 47.443 9.77e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu05g00296 HSF_DNA-bind 5.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00296 K09419 - gmx:100791020 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00296 05 2178785 2180850 Tsu05g00296 05 2178785 2180850 ECH