Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00295 ATGGATTCAAAACTTCCAACACAAGCTGCACACACAAACACACTTTATAACCCATTTTCAAACCGCTTCACTCATCTTCATTTCCACacttctctctcattttctcatttTCCATTCTCCGATTTTCAAaaaagaagagaaatgtCTCATCCAGATTTGCTACATTTATGTCTTTCTTCTCCTAATTGTAACAGTGATACTTGTTTTCTTGAATCAACTCATGTTACAGGGAAAGTTAAATCCCAAATTAGCTCCACAAAGGGATTCTGGACTGATGAAGAGGATAATCTTTTGATTGAGACATTCAAGAAGCACGGCGGAAGCAACTGGAAATGTATAGGTGAATTTCACACTGCATACTTCCCTGGGAGAACCGACATTGAATGCTTCCATCGTTGGCAAAAGGTTTCGGATTTTGATCTTGGAAAGAGATCATGGACAAAGGAGGAGGATGAGATCTTAACTGAACTGGTAAGAAAGTATGGTTTCAAGAGATGGtcttttattgcaaaattcatACCAGGTCGTGTTGGAAAGCAATGTCGCGAGAGGTGGCATAATAACCTTGATCCTGCTATAAAAAAGGACGCATGGACGGAGGAGGAGGAATCAATACTTGCTTACTATCACCAAATATATGGCAGTAAATGGGCAGAAATTGCAAGGGTTCTTCCTGGAAGGAGTGACAATGCTATAAAAAATCATTGGAACAGCTCAATGAAGAAGAAGTCGTCTACATCGCCTATTAGGCTTGACATGAATGTTGTTTCCACTTCCAGTTTCTGCACTTCTCGAATAAAGCCAGCTGAGGATCAAAATTTAATTGGAATGGCTTCTCCGAAGCAAAGTCACTGGTTGAAGCACAATGCTGATAACCTTCCAACAAGAATGATTAATCGAAATTCTTCTGCAGAGGAATTTTGCTTTGAAAAAAACAGTTTTGCCGTGGCAACTCCTAGGGCCTCTGGACAAGGTTTAAGAAGACAAGTCAATTTAACAAATGAAATGGAAACTACCTTCTCAGTTAAACATATGAACTTGTCTTCGGATAATTCGTTTACTACAAATATGGATTGTTTCCCTTCTTCCAGTACTGGTACTTATGAGGCATATAAATCTCCCAAATGGCAAAAGGTTTCTTTGTTAGATTCAAAGTTTTATGCCGGTAATGAATCCGACAGTCTCCATTTGAGCTACTCAAAATTGGCTAATCATGAGAAGAATGTTTATGTTGGAAGAGAAAGCAATGACAAAAGCGATGTGAGCCCGGAATCTGTACTACGAAGCTTAGCAATGAGCTATGAGAACATTCCTTCTATTATAAGGAAAAGAACTTCTAGGAAGGGATGCAATGATGCCAATAATTATGGCAAGTCTCAAACACCTTTGAGAATGGATGTCTCAACTCCTGAAGCAGGATGTGTAATTGGCTTTGATAATTTAAAACTCAACCAAGGATTTGTTCCATTCCTTCCTAGACATGCAATGGAATGA 1494 0.3775 MDSKLPTQAAHTNTLYNPFSNRFTHLHFHTSLSFSHFPFSDFQKRREMSHPDLLHLCLSSPNCNSDTCFLESTHVTGKVKSQISSTKGFWTDEEDNLLIETFKKHGGSNWKCIGEFHTAYFPGRTDIECFHRWQKVSDFDLGKRSWTKEEDEILTELVRKYGFKRWSFIAKFIPGRVGKQCRERWHNNLDPAIKKDAWTEEEESILAYYHQIYGSKWAEIARVLPGRSDNAIKNHWNSSMKKKSSTSPIRLDMNVVSTSSFCTSRIKPAEDQNLIGMASPKQSHWLKHNADNLPTRMINRNSSAEEFCFEKNSFAVATPRASGQGLRRQVNLTNEMETTFSVKHMNLSSDNSFTTNMDCFPSSSTGTYEAYKSPKWQKVSLLDSKFYAGNESDSLHLSYSKLANHEKNVYVGRESNDKSDVSPESVLRSLAMSYENIPSIIRKRTSRKGCNDANNYGKSQTPLRMDVSTPEAGCVIGFDNLKLNQGFVPFLPRHAME 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00295 497 Gene3D - 143 194 - -
Tsu05g00295 497 Gene3D - 196 256 - -
Tsu05g00295 497 ProSiteProfiles Myb-like domain profile. 82 137 IPR001005 -
Tsu05g00295 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 136 IPR017930 -
Tsu05g00295 497 CDD SANT 197 237 IPR001005 -
Tsu05g00295 497 Pfam Myb-like DNA-binding domain 88 135 IPR001005 -
Tsu05g00295 497 ProSiteProfiles Myb-like domain profile. 190 240 IPR001005 -
Tsu05g00295 497 ProSiteProfiles Myb-like domain profile. 138 189 IPR001005 -
Tsu05g00295 497 PANTHER TRANSCRIPTION REPRESSOR MYB5 85 303 - -
Tsu05g00295 497 SMART sant 86 139 IPR001005 -
Tsu05g00295 497 SMART sant 142 191 IPR001005 -
Tsu05g00295 497 SMART sant 194 242 IPR001005 -
Tsu05g00295 497 CDD SANT 145 189 IPR001005 -
Tsu05g00295 497 Gene3D - 80 141 - -
Tsu05g00295 497 SUPERFAMILY Homeodomain-like 83 137 IPR009057 -
Tsu05g00295 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 244 IPR017930 -
Tsu05g00295 497 SUPERFAMILY Homeodomain-like 141 236 IPR009057 -
Tsu05g00295 497 Pfam Myb-like DNA-binding domain 146 204 - -
Tsu05g00295 497 PANTHER MYB PROTEIN-RELATED 85 303 - -
Tsu05g00295 497 Coils Coil 496 497 - -
Tsu05g00295 497 CDD SANT 90 136 IPR001005 -
Tsu05g00295 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 193 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00295 Tsu-Chr5 2172760 2176150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00295 60 466 MYB Transcription Factor Family AT3G09370 35.885 1.40e-68 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g00295 Myb_DNA-bind_6 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00295 - - cam:101501970 583.563