Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00279 atgaTTATAGGTAAAAAGTTTGAGGGTTGGGAATGCATAAATGGAGGGTTGCAGTGCTGTGGGAACTTGTCGCCGGAGCCACACTATCCGTCGATAACAAGGTATCCGAAAGGAACGTCTCCGCCGGCGGAAGGATCAGAGGCAACAATAAGTACTGTTGTTTTTTGTGTTATGGGAATGACTTGTGCTGCCTGTGCTGGATCTGTTGAGAAAGCCATTAAACGCTTACCTGGAATTCTAGAGGCTATGGTTGATGTCTTGAATGATAAAGCACAAGTTCAATATTATCCATCCATAGTTAATGAAGACAAAATACGTGAAGCCATTGAAGATGCTGGTTTTGAGGCCAAATCCATGGGAGAAAGTTCCAACACCACGTCGCTTCAAATATGTCGAGTACACATAGGCGGCATGACTTGTACGTCTTGCTCCACCAGCGTAGAATCAGTTCTTCAATCTCTTCGAGGGGTGCAAATAGCGCAAGTGGCATTAGCAACCGAAGAAGCAGAAATCCATTACAACCCGAATATCATAAGCTATAATCAACTAATGGAAGCTATAGTAGATACAGGTTTTAAACCTGTACTAATAAGCAAAGGAGAACACATTAGCAAAGTTGAACTAAAAATTGATGGCATAAAAAATGAGCAATCAATGAATATCATTGAACAATCTCTTAGAAGACTCCAAGGTGTTGAAACCATAGAAACTTATCAAGATATTAATAACATTGTCTTAACTTATAAACCTTATATCACAGGACCAAGAACCTTCATTGAAGTCATTGAATCTACAGGATCAGGGTGTTTTAGAGCTGTGATATTTGCAAATGATGGAGGAAGAAAAGCACATAAGCAAGAAGAAATTAATAGatacttcaaattattaatttggaGTTTGGCTTTTACTATTCCTGTTTTTTTGACATCTATGGTTCTTATGTATATACCTGgaattaaacatattttagaAATCAAAATTGTCAATATGCTGAATATTGGATTGCTTATAAGGTGGGAATTTTCGACACCAGTGCAGTTTATCATAGGAAGAAGATTCTATGTTGGAGCTTATAAAGCTTTCAGAAAAGGTTATGCCAACATGGATGTTTTGATAGCATTGGGAACAAATGCAGCTTATTTCTATTCTGTCTATGTTGTTGGAAGAGCTGTTTTTTCTTCGCATTTCAAAGGAAGTGATTTTTTCGAAACAAGTTCTATGCTAATTTCTTTTATTCTACTTGGGAAGTATTTGGAAGTGTTGGCTAAAGGGAAAACATCACAGGCTATTGCGAAACTTATGGATTTGACACCTGATACAGCAATCTTATTAACTCAAGATGATAAGGGAAATGTTATAGGTGAAAGAGAAATTGATAGTAGGTTGATACAGAAGAATGATGTGATCAAAGTTGTGCCGGGCGCAAAAGTAGCATCGGATGGTTTTGTTGTTTGGGGACAAAGTCATGTAAATGAGAGTATGATAACTGGTGAGGCAAAGCCTGTTGGTAAGATTAAGGGTGATATGGTAATTGGTGGTACTGTGAATGAGAATGGTGTTTTGCATGTTAAGGTAACAAGGGTTGGATCAGAAAGTGCACTTTCTCAGATTGTTAGACTTGTTGAGTCTGCTCAGATGGCTAAGGCTCCTGTTCAGAAATATGCAGATCAGATTTCTAAATACTTTGTTCCTATAGTCATTGTAATATCTCTTTCAACATGGATTTCTTGGTTTATAGCTGGAAAGTTGCATACATATCCAAAATCATGGATACCAAAATCAATGAATAGTTTTGAGCTTGCACTTCAGTTTGGGATTTCAGTCATGGTGATAGCTTGTCCATGTGCTCTAGGACTAGCCACTCCTACGGCTGTCATGGTCGGTACTGGAGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGTGGTCAAGCATTAGAAAGTGCACACAAAGTGAATTGCATTGTGTTTGATAAGACAGGAACTCTCACCGTTGGAAAGCCGTTGGTTGTAACCACAAAACTCTTCAATAATATGTCAGTTAAAGATTTCTATGAATTTGTTGTGAATAGTGAACATCCAATAGCAAAGGCCATTGTTGAGCATGCCAAAAATATTACACAAGatgaacaaaatcattcatgGCCAGAAGCAAAAGATTTTGTGTCTGTTTCAGGACAAGGAGTGAAGGCCTTAGTTAAAAACAAGCAAATAATGGTTGGGAATAAAAAACTGATGCTAGATCATAATATAGTCATTTCAGTAGAAGCTGAAGAAATACTAGCAGAAGCCGAAAGCAAGGCTCAAACCGGGATTTTAGTAGCATTGGATGGAGAAGTTGTTGGTGTTCTTGCTGTGTCTGATCCATTGAAACCTGATGCAAAAGAAGTTATATCTATTCTTAAATCCATGAAAATAAGGAGCATAATGGTGACAGGTGACAATTGGGGAACTGCAAATTCTATAGCTAGACAAGCCGGTATTGAAACTGTCATGGCAGAGGCTCAACCTGAGACTAAAGCTACTAAAGTAAAAGAATTGCAGAGTTCTGGCTACACAGTAGCAATGGTTGGAGATGGGATAAATGACTCACCGGCACTGGTGGCAGCTGATGTTGGAATGGCAATAGGTGCCGGCACAGACATAGCTATTGAAGCAGCTGACATTGTTCTCATGAAGAGTAACTTGGAGGATATAATAACAGCCATTGATCTTGCAAAGAAAACTTTCTCCCGTATACGTCTAAATTACATTTGGGCTCTTGGATACAATCTTCTAGCAATTCCTGTTGCTGCTGGCATCCTTTATCCGTCTACTAAATTTCGGTTACCACCTTGGGTTGCCGGAGCTGCAATGGCGGCCTCTTCTATTAGTGTTGTTTGCTCCTCTCTCTTGTTAAAGAAATATAAGAGACCAACCAAGCTTAACAACTTGGAGATGAATGATATTCAGATTGAATGA 2958 0.382 MIIGKKFEGWECINGGLQCCGNLSPEPHYPSITRYPKGTSPPAEGSEATISTVVFCVMGMTCAACAGSVEKAIKRLPGILEAMVDVLNDKAQVQYYPSIVNEDKIREAIEDAGFEAKSMGESSNTTSLQICRVHIGGMTCTSCSTSVESVLQSLRGVQIAQVALATEEAEIHYNPNIISYNQLMEAIVDTGFKPVLISKGEHISKVELKIDGIKNEQSMNIIEQSLRRLQGVETIETYQDINNIVLTYKPYITGPRTFIEVIESTGSGCFRAVIFANDGGRKAHKQEEINRYFKLLIWSLAFTIPVFLTSMVLMYIPGIKHILEIKIVNMLNIGLLIRWEFSTPVQFIIGRRFYVGAYKAFRKGYANMDVLIALGTNAAYFYSVYVVGRAVFSSHFKGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPDTAILLTQDDKGNVIGEREIDSRLIQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEAKPVGKIKGDMVIGGTVNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKYADQISKYFVPIVIVISLSTWISWFIAGKLHTYPKSWIPKSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPLVVTTKLFNNMSVKDFYEFVVNSEHPIAKAIVEHAKNITQDEQNHSWPEAKDFVSVSGQGVKALVKNKQIMVGNKKLMLDHNIVISVEAEEILAEAESKAQTGILVALDGEVVGVLAVSDPLKPDAKEVISILKSMKIRSIMVTGDNWGTANSIARQAGIETVMAEAQPETKATKVKELQSSGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIITAIDLAKKTFSRIRLNYIWALGYNLLAIPVAAGILYPSTKFRLPPWVAGAAMAASSISVVCSSLLLKKYKRPTKLNNLEMNDIQIE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00279 985 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 24 976 - -
Tsu05g00279 985 TIGRFAM TIGR00003: copper ion binding protein 55 116 IPR006122 GO:0005507
Tsu05g00279 985 SFLD p-type atpase 637 907 IPR044492 -
Tsu05g00279 985 ProSiteProfiles Heavy-metal-associated domain profile. 52 118 IPR006121 GO:0046872
Tsu05g00279 985 ProSitePatterns Heavy-metal-associated domain. 135 164 IPR017969 GO:0046872
Tsu05g00279 985 ProSitePatterns Heavy-metal-associated domain. 57 86 IPR017969 GO:0046872
Tsu05g00279 985 Gene3D - 128 199 - -
Tsu05g00279 985 ProSiteProfiles Heavy-metal-associated domain profile. 130 196 IPR006121 GO:0046872
Tsu05g00279 985 SUPERFAMILY HMA, heavy metal-associated domain 49 120 IPR036163 GO:0046872
Tsu05g00279 985 Pfam E1-E2 ATPase 448 633 - -
Tsu05g00279 985 Gene3D - 737 787 IPR023299 GO:0000166
Tsu05g00279 985 Gene3D - 662 736 IPR023299 GO:0000166
Tsu05g00279 985 PRINTS Copper-transporting ATPase 1 signature 107 127 - -
Tsu05g00279 985 PRINTS Copper-transporting ATPase 1 signature 78 101 - -
Tsu05g00279 985 PRINTS Copper-transporting ATPase 1 signature 52 77 - -
Tsu05g00279 985 PRINTS Copper-transporting ATPase 1 signature 153 174 - -
Tsu05g00279 985 Pfam Heavy-metal-associated domain 133 193 IPR006121 GO:0046872
Tsu05g00279 985 Pfam Heavy-metal-associated domain 56 115 IPR006121 GO:0046872
Tsu05g00279 985 Gene3D - 622 913 IPR023214 -
Tsu05g00279 985 Gene3D - 423 545 - -
Tsu05g00279 985 Gene3D - 45 118 - -
Tsu05g00279 985 SUPERFAMILY Calcium ATPase, transmembrane domain M 404 647 IPR023298 -
Tsu05g00279 985 SUPERFAMILY HMA, heavy metal-associated domain 127 200 IPR036163 GO:0046872
Tsu05g00279 985 CDD HMA 57 117 IPR006121 GO:0046872
Tsu05g00279 985 Pfam haloacid dehalogenase-like hydrolase 651 870 - -
Tsu05g00279 985 SUPERFAMILY HMA, heavy metal-associated domain 201 269 IPR036163 GO:0046872
Tsu05g00279 985 SUPERFAMILY Calcium ATPase, transduction domain A 455 541 IPR008250 -
Tsu05g00279 985 CDD HMA 135 194 IPR006121 GO:0046872
Tsu05g00279 985 ProSitePatterns E1-E2 ATPases phosphorylation site. 657 663 IPR018303 -
Tsu05g00279 985 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 408 935 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g00279 985 ProSiteProfiles Heavy-metal-associated domain profile. 205 266 IPR006121 GO:0046872
Tsu05g00279 985 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 368 965 IPR027256 GO:0006812|GO:0016021|GO:0019829
Tsu05g00279 985 PANTHER ATP7, ISOFORM B 24 976 - -
Tsu05g00279 985 PRINTS P-type cation-transporting ATPase superfamily signature 803 813 - -
Tsu05g00279 985 PRINTS P-type cation-transporting ATPase superfamily signature 655 669 - -
Tsu05g00279 985 PRINTS P-type cation-transporting ATPase superfamily signature 879 891 - -
Tsu05g00279 985 PRINTS P-type cation-transporting ATPase superfamily signature 491 505 - -
Tsu05g00279 985 PRINTS P-type cation-transporting ATPase superfamily signature 781 792 - -
Tsu05g00279 985 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
Tsu05g00279 985 SUPERFAMILY HAD-like 654 962 IPR036412 -
Tsu05g00279 985 CDD P-type_ATPase_Cu-like 296 967 - -
Tsu05g00279 985 SFLD C1.7: P-type atpase like 637 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00279 Tsu-Chr5 2067656 2072677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00279 50 985 Primary Pumps ATPases AT1G63440 70.975 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00279 K17686 - gmx:100817431 1540.01