Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00276 ATGGATGAGAGAGAAGCTATGGCATTCTCTGATGGGTCAGGTTCATATTACATGCATAGAGGAGGAGGGGTTGGTGGGTTTCAACAGACACCTTCTGGGTTTAGAGCTTTGTCTAATGCTCATGGTGGTTCTGAATTTTCAGTAGAGGTTCAACATGGTAGTTTTAGTCATGGTGGTGGTGTTAGCAATAGCATAGGTTCATCTTCTGGTGCTGCAGTGCCTTATTCAGGTGATCAGCctgtgaaaaagaaaagagggaGGCCTAGAAAGTATGGTCCTGATGTACCTGTCTCTCTGAGACTCTCTCCTATGTCTGCTACTGCTAATTCCACTCCTGATTCGGAGAAACGGCCGAGAGGGCGTCCTCCTGGAAGTGGAAGGAAGCAACAACTAGCTGCTCTAGGTGAATGGATGAACACTTCTGCCGGACAGGCTTTTTCACCCCATGTTATCACAATTGGAGTTCAGGAGGACATTGTAGCAAAGCTGTTGGCGGTTTCACAACATAGGCCACGTGCTTTATGCATCTTGTCGGGAACTGGGACTATATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACTAGTGTCAGTGTTACATATGAGGGGCGATTTCAAATTTTATGCTTATCTGGTTCTTACTTGGTTGCCGAAGATGGTGGACCTCAAAATAGAACTGGTGGCATTAGTGTTTCCCTTTCTAGTCCGGATGGTAATGTTATTGGTGGTGGTGTTGCCAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTACTTTGCAGTTTTGTATATGGTGGCTCTAAGCCAAAGACAACAAAGCAAGGGTCGACTACAAAAGATGACGATGATTCAGAGCCTCAGAGTAGTGACAAATTAGCTTCTCCGGGAAGTGCACCGCCTAATCAAAACTACACAGCTTCTGGATCAGAAATGTGGCTTGGATCAAGGTCAGTAGATGTGAAAAATGCACATCCACACACTGGTATTGACTTGATGCATGGGTGA 999 0.4555 MDEREAMAFSDGSGSYYMHRGGGVGGFQQTPSGFRALSNAHGGSEFSVEVQHGSFSHGGGVSNSIGSSSGAAVPYSGDQPVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPDSEKRPRGRPPGSGRKQQLAALGEWMNTSAGQAFSPHVITIGVQEDIVAKLLAVSQHRPRALCILSGTGTISSVTLRQPASTSVSVTYEGRFQILCLSGSYLVAEDGGPQNRTGGISVSLSSPDGNVIGGGVARLIAASPVQVVLCSFVYGGSKPKTTKQGSTTKDDDDSEPQSSDKLASPGSAPPNQNYTASGSEMWLGSRSVDVKNAHPHTGIDLMHG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00276 332 Gene3D - 148 274 - -
Tsu05g00276 332 MobiDBLite consensus disorder prediction 268 332 - -
Tsu05g00276 332 ProSiteProfiles PPC domain profile profile. 143 283 IPR005175 -
Tsu05g00276 332 MobiDBLite consensus disorder prediction 57 74 - -
Tsu05g00276 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 261 - -
Tsu05g00276 332 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 332 - -
Tsu05g00276 332 MobiDBLite consensus disorder prediction 57 129 - -
Tsu05g00276 332 CDD DUF296 148 260 IPR005175 -
Tsu05g00276 332 MobiDBLite consensus disorder prediction 272 286 - -
Tsu05g00276 332 PRINTS AT-hook-like domain signature 82 92 IPR017956 GO:0003677
Tsu05g00276 332 PRINTS AT-hook-like domain signature 114 125 IPR017956 GO:0003677
Tsu05g00276 332 MobiDBLite consensus disorder prediction 287 310 - -
Tsu05g00276 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Tsu05g00276 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 332 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00276 Tsu-Chr5 2049812 2053161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00276 1 332 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.964 1.19e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00276 - - cam:101497147 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00276 05 2049812 2053161 Tsu05g00276 05 2049812 2053161 ECH
Tsu05g00276 05 2049812 2053161 Tsu02g00469 02 3927086 3931036 PCT