Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00273 ATGGGAAAAGGTAAACCTAGGGCTGTTGAAAAAGGTGTAGTTGGTCCAAATCTAACCGTTTCATCTCCGACTATACCATCGGCACCGGTATATTATCCTACCGATGATGAATTCAAAGATCCTTTAGATTTTATTCATAAGATTAGACATGAAGCTGAACCTTATGGAATTTGTAGAATTGTTCCTCCTAATAATTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTTACTTTTCCTACTAAAACTCAAGCGATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCCGATTCCAAGACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTGTAGTAAGAAGCTTAAGAAGAAGATTGTGTTTGAAGGTGAGGATTTGGATTTGTGTAAGGTTTTTAATGCGGTGAAACGGTTTGGAGGGTATGATAAGGTTGTTGATGGAAAGAAATGGGGTGATGTTGCTAGGTTTGTGAAATCTTCCGGGAAGATTTCTGATTGTGCTAAGCATGTTTTGTGTCAGTTGTATAGAGAGCATCTTTATGATTACGAGAAATTTTGTAAGAAAAGTTGTAAGAAAAGTGTACAAGAGGATTGTAAGAGTGATCATGGGGTACAAACTTCGGGCAGTTCGGTGTCCAAGAAGCATCATGGGGTTGTAGATGGTTTAAAAGGTAAGGATAGGAAAGCAAAGGAAGAAAATCGTGATCAGATTTGTGAGCAGTGTAAAAGTGGGTTGCATGGGGAGGTGATGCTTTTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATTCCGTTGGGAAACTGGTATTGTTTCAACTGTTTGAGTTCTGATAGGGAGAGCTTTGGTTTTGTGCCTGGGAAGAAGTATTCATTGGAAACTTTTAAACGCACTGCGGATAGGTCGAGGAGGAGGTGGTTTGGACAGGGACCTGTTTCAAGGgtgcaaatagagaaaaaattcTGGGAGATTGTGGAGGGGTCAGTTGGCGAGGTTGAGGTTATGTATGGAAATGACTTGGATACGTCTCTCTATGGGAGTGGTTTCCCAAATGAAACTAACCAGAAACCACAATCTATTGATGAAAAGTTATGGCAAGAATATTCTACTAACCCATGGAATCTGAATAACTTGCCTAAGTTAAAAGGCTCAATGCTTCGAGCTGTTCACCACAATATCACTGGTGTTATGGTACCATGGCTGTATATTGGAATGTTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGCAGCCTTCCTGATCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTTCAGCACACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTACCACGGTGGTTTCAATCTTGGCCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCACACGGTACATTTGGAGCTGATCTCTATAAGCGGTTTCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCAAGTATGGTGATGTTGATAGCAGAGGGTCATCTTATTTGAAAGCGGAATTGTTGACAATAATTGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGAATAGTAAAATCTTCTTGTTTAGCTCCTCGGAAATGTCCCCAATACGTAGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCCGTCCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTTCTAAACTTCGTCTTCTCTACCGTCATTCACTTGGTGAATTGTATGACTTGGCATTTTCTATTGACAAATATACTTCTGAAGAGAAAGCTGAGAGTAGAAGTGTAAAAAGGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGCAGCTCCATTACTTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAACGTTTTTGTGACTGATGTATCTGTTACCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCCGAGATGGATTCCGTTCGGGATATGGTAAAGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGATTGTGTGACAAAAATTGAGTCATGGTTGAGTCATCAGGATGGCTCAAGTTTAACGAAAGTTCATTTAGAATATGTTGATGAGTTACTGAGATTTGACCCTGTACCATGCAATGAGCCTCATTATCATAAATTGAAGGAATATGCAGAAGAAGCAAGAATGTTAATTCAGGAGATTGAAGCTGCTTTGTCAATGTGTTCCAATATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATATACATGAAAGAGACTAAAAATTTAGAAGGGAAAATTTCTTCAACCAAGGCATGGATGGGTAGTGTCAAAAACTGCATCTCAGCTAGTGATCCTGCTCAATTAGATGTTGATGTTCTTTACAAGTTGATGTCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCACTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTCTCAATGTCGTTGTATATTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCGGAGTTGAGGCTACTAAGGAATTACCATTCAGATGCTATGTCATGGGTTTCTCACTTTAACAATGTTTTAGAGAGAGTTCACAGACAGGAAGATCAACATAATGCATTTGATGAATTGAAGAGCATTCTTGAAAAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGACAGAAAGCTTCAAAGGCACATGATTCAAAGATGCCCCTGGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTAGGAATCGAGGGAGAGAAGCAATTTATCAGTTTATCTTGTGTGCTTGGTGTCGCCATACATTGGGAGGAAAGGGCTGGAGAGATTCTTTCACTTGAGGCTTCTATTTCTGACTTTGAAGACATGATAAGGTTCAACACTTCTTGA 3303 0.4024 MGKGKPRAVEKGVVGPNLTVSSPTIPSAPVYYPTDDEFKDPLDFIHKIRHEAEPYGICRIVPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKVFNAVKRFGGYDKVVDGKKWGDVARFVKSSGKISDCAKHVLCQLYREHLYDYEKFCKKSCKKSVQEDCKSDHGVQTSGSSVSKKHHGVVDGLKGKDRKAKEENRDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRESFGFVPGKKYSLETFKRTADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSLYGSGFPNETNQKPQSIDEKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVFSTLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGTFGADLYKRFHKTAVLSHEELLCVVAKYGDVDSRGSSYLKAELLTIIDREKSWREKLWKNGIVKSSCLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTSKLRLLYRHSLGELYDLAFSIDKYTSEEKAESRSVKRQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDVSVTALRKAEQFLWAGSEMDSVRDMVKSLTEAQKWAEGIKDCVTKIESWLSHQDGSSLTKVHLEYVDELLRFDPVPCNEPHYHKLKEYAEEARMLIQEIEAALSMCSNMSELELLYSRACGLPIYMKETKNLEGKISSTKAWMGSVKNCISASDPAQLDVDVLYKLMSEIADLQVQLPEIDALQNLLNQAESCSSQCRCILEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAMSWVSHFNNVLERVHRQEDQHNAFDELKSILEKGLSLKIQVDELPLVEIELKKANCRQKASKAHDSKMPLEFIQQLLKEATMLGIEGEKQFISLSCVLGVAIHWEERAGEILSLEASISDFEDMIRFNTS 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00273 1100 ProSiteProfiles Zinc finger PHD-type profile. 237 287 IPR019787 -
Tsu05g00273 1100 SMART ARID_2 95 185 - -
Tsu05g00273 1100 CDD ARID 97 185 - -
Tsu05g00273 1100 ProSiteProfiles JmjC domain profile. 377 543 IPR003347 -
Tsu05g00273 1100 Pfam jmjN domain 29 62 IPR003349 -
Tsu05g00273 1100 Pfam PHD-finger 239 286 IPR019787 -
Tsu05g00273 1100 SUPERFAMILY ARID-like 78 190 IPR036431 GO:0003677
Tsu05g00273 1100 SMART cupin_9 377 543 IPR003347 -
Tsu05g00273 1100 Pfam ARID/BRIGHT DNA binding domain 101 185 IPR001606 GO:0003677
Tsu05g00273 1100 SUPERFAMILY Clavaminate synthase-like 361 558 - -
Tsu05g00273 1100 Pfam JmjC domain, hydroxylase 410 526 IPR003347 -
Tsu05g00273 1100 Pfam C5HC2 zinc finger 620 671 IPR004198 -
Tsu05g00273 1100 PANTHER LYSINE-SPECIFIC DEMETHYLASE 22 900 - -
Tsu05g00273 1100 Pfam PLU-1-like protein 717 880 IPR013637 -
Tsu05g00273 1100 Pfam PLU-1-like protein 887 1035 IPR013637 -
Tsu05g00273 1100 Gene3D - 86 199 IPR036431 GO:0003677
Tsu05g00273 1100 SMART bright_3 96 190 IPR001606 GO:0003677
Tsu05g00273 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 286 IPR013083 -
Tsu05g00273 1100 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 22 900 - -
Tsu05g00273 1100 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Tsu05g00273 1100 MobiDBLite consensus disorder prediction 203 227 - -
Tsu05g00273 1100 ProSitePatterns Zinc finger PHD-type signature. 240 284 IPR019786 -
Tsu05g00273 1100 CDD PHD_RSF1 240 284 - -
Tsu05g00273 1100 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Tsu05g00273 1100 SMART PHD_3 239 285 IPR001965 -
Tsu05g00273 1100 Coils Coil 815 838 - -
Tsu05g00273 1100 Gene3D Cupin 22 549 - -
Tsu05g00273 1100 SUPERFAMILY FYVE/PHD zinc finger 231 287 IPR011011 -
Tsu05g00273 1100 SMART JmjN_1 27 68 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00273 Tsu-Chr5 2019555 2030651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00273 23 92 JUMONJI Transcription Factor Family AT1G08620 51.351 2.22e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu05g00273 PLU-1 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00273 K11446 - gmx:100789512 1868.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00273 05 2019555 2030651 Tsu05g00273 05 2019555 2030651 ECH