Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00264 ATGCAGAGGAGCTACAGCTATAACAACTTTCATGAGAAACCTGGCTTTCCTTTTGAAACTTGCCATAGCACACTCATGAATTCCGAAAATTTTCGACTATGTGAATTGAGCTCCCCCGAAAATAGTTTCTTCACAGGACAAATGAGAAGAGCCTCTAGTGCCGGAGATTTGCAGAACATGAAAGCAACTAACATCCATGGGTCTCAAACGGAGGAAGCAAACTTGTTCAAAGTAGGGCGTTACAGtgtggaagaaagaaaagaaaaaatctcTAAATACAGGGCAAAGAGAAAACAAAGGAAGTTCAACAAGATTATTAAGTATGCATGCCGAAAGACACTTGCCGACAATCGGACACGCATACGTGGCAGATTCGCACGTAATGACAATGAAACTAACGACATTCCAAAAGCTTTGTGTTCAAACACAGAACAATTTCACGAAGACGAATTCTGGGTTGATCTCATTGAAGGGTTAAATGACGAGCTCCTCTATTAA 498 0.3916 MQRSYSYNNFHEKPGFPFETCHSTLMNSENFRLCELSSPENSFFTGQMRRASSAGDLQNMKATNIHGSQTEEANLFKVGRYSVEERKEKISKYRAKRKQRKFNKIIKYACRKTLADNRTRIRGRFARNDNETNDIPKALCSNTEQFHEDEFWVDLIEGLNDELLY 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00264 165 ProSiteProfiles CCT domain profile. 86 128 IPR010402 GO:0005515
Tsu05g00264 165 Pfam CCT motif 86 128 IPR010402 GO:0005515
Tsu05g00264 165 PANTHER CCT MOTIF FAMILY PROTEIN 1 161 - -
Tsu05g00264 165 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 1 161 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00264 Tsu-Chr5 1959722 1960649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00264 85 135 C2C2-CO-like Transcription Factor Family AT5G24930 52.830 3.40e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g00264 CCT 3.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00264 - - mtr:MTR_5g010120 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00264 05 1959722 1960649 Tsu05g00264 05 1959722 1960649 ECH
Tsu05g00264 05 1959722 1960649 Tsu02g00436 02 3671875 3673516 PCT