Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00263 ATGGGGTTTCCAACAGAGATTGTGTTGCCAAAAGTATTTGTGCAGCTACTTTCTATACTGTCATTCATCAGAAAATTCATTACCATCTTCTTCTTTTATATCGGTCTCAATTCCGACTTTCCATTTCAAGAAACTATGCCTGAATTTCCACCAGTGAATCCTCTTCTTCTGATCAGAGAAATACTACCGGTGGTTAAATTCTCGGAGCTGGCGGTTGTAGAATACTCGCCGGAGAGCTGCACTGTCTGTCTTTACGAGTTTAAGGCGGAGGACGAGATCCAACGGCTTACAAACTGTCGCCATATCTTTCATAGGAATTGTCTCGACCGTTGGATGGGATATGATCATACAACATGTCCTTTGTGTCGCACAACGTTTCTACCTCATCATCATATGCAAGATGCctaa 408 0.4216 MGFPTEIVLPKVFVQLLSILSFIRKFITIFFFYIGLNSDFPFQETMPEFPPVNPLLLIREILPVVKFSELAVVEYSPESCTVCLYEFKAEDEIQRLTNCRHIFHRNCLDRWMGYDHTTCPLCRTTFLPHHHMQDA 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00263 135 PANTHER BRH1 RING FINGER PROTEIN 5 134 - -
Tsu05g00263 135 SMART ring_2 80 122 IPR001841 -
Tsu05g00263 135 ProSiteProfiles Zinc finger RING-type profile. 80 123 IPR001841 -
Tsu05g00263 135 SUPERFAMILY RING/U-box 62 130 - -
Tsu05g00263 135 Pfam Ring finger domain 79 123 IPR001841 -
Tsu05g00263 135 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 134 - -
Tsu05g00263 135 CDD RING-H2 80 123 - -
Tsu05g00263 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 128 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00263 Tsu-Chr5 1955630 1956482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00263 1 130 C3H Transcription Factor Family AT1G63840 52.448 3.35e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00263 K16281 - gmx:102665617 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00263 05 1955630 1956482 Tsu05g00263 05 1955630 1956482 ECH
Tsu05g00263 05 1955630 1956482 Tsu02g00434 02 3661310 3662526 PCT