Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00257 ATGGGTAGCAAAAACAAAGATAACAATGAGAGGGATTCACTTCAGAAGGTTTTGTCTCACAACGGTCGATATGTTCAATACACTTTGTATGGAAACTTGTTTGAAGTTTCCTCAAAATATGTTCCTCCCCTTCGTCCTATCGGTAGAGGTGCTTATGGCATCGTCTGTGCTGCTGTTAATTCTGATACACATGAGGAAGTTGCTATCAAGAAAATTGGCAATACATTTGACAACATTATTGATGCTAAAAGAACTTTGAGGGAAATTAAGCTCCTTCGTCACATGGACCATGAAAATGTTATTGCTATTAAGGATATTATACGACCTCCGCAAAAGGATTCTTTTAATGATGTTTACATTGTTTATGAATTGATGGACACCGATCTTCATCAGATTATCCGTTCCCATCAACCTCTCAACCTTGACCATTGTAAGTACTTTCTGTACCAGCTGTTAAGGGGACTGAAATATGTGCATTCGGCTAATGTCTTGCATCGTGATCTTAAACCAAGTAATTTATTGTTGAATGAAAATTGTGACCTTAAAATTGGGGACTTTGGTTTGGCGAGGACGACATCTGAGACTGATTTTATGACGGAGTATGTCGTTACTAGATGGTACCGAGCACCAGAATTGCTCCTTAATTGTTCAGAATACACCTCTGCAATCGATGTTTGGTCGGTTGGTTGCATATTTGCCGAAATTATGACCAAAGAACCCTTGTTTCCTGGTAAAGATTATGTTCATCAACTAAAACTTGTAACTGAGTTAATAGGATCGCCTGACGATTCGAGCCTTGGATTTCTCCGAAGTGAAAATGCGAGAAGGTATCTTAGACAGCTTCCACAATTCGGGAAGCAAAATTTTTCGGCGAAATTTCCTAACATAGCGGCTGAGCCTCTGGACCTACTAGAAAAAATGCTTATATTTGATCCCGACAAACGAATTACAGTGGATGAGGCACTATGTCACCCATACCTATCATCGCTTCATGACATCAATGATGAGCCAGTTACTCCCATGCCATTCAGTTTTGATTTTGAGCAGCCATCATGCACTGTAGAGCACATTAAGGAGCTTATTTGGAGGGAATCAGTGAAGTTCAATCCAGATCCATCCTCtcagtaa 1128 0.3972 MGSKNKDNNERDSLQKVLSHNGRYVQYTLYGNLFEVSSKYVPPLRPIGRGAYGIVCAAVNSDTHEEVAIKKIGNTFDNIIDAKRTLREIKLLRHMDHENVIAIKDIIRPPQKDSFNDVYIVYELMDTDLHQIIRSHQPLNLDHCKYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNENCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCIFAEIMTKEPLFPGKDYVHQLKLVTELIGSPDDSSLGFLRSENARRYLRQLPQFGKQNFSAKFPNIAAEPLDLLEKMLIFDPDKRITVDEALCHPYLSSLHDINDEPVTPMPFSFDFEQPSCTVEHIKELIWRESVKFNPDPSSQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00257 375 ProSitePatterns MAP kinase signature. 76 179 IPR003527 GO:0004707|GO:0005524|GO:0006468
Tsu05g00257 375 ProSiteProfiles Protein kinase domain profile. 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00257 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 373 - -
Tsu05g00257 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Tsu05g00257 375 SMART serkin_6 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00257 375 CDD STKc_TEY_MAPK 34 370 - -
Tsu05g00257 375 Gene3D Phosphorylase Kinase; domain 1 24 364 - -
Tsu05g00257 375 SUPERFAMILY Protein kinase-like (PK-like) 44 335 IPR011009 -
Tsu05g00257 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 16 373 - -
Tsu05g00257 375 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
Tsu05g00257 375 Pfam Protein kinase domain 45 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00257 375 Gene3D Transferase(Phosphotransferase) domain 1 125 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00257 Tsu-Chr5 1917151 1919786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00257 8 373 MAP Kinase Gene Family AT4G01370 80.601 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Tsu05g00257 Pkinase 1.9e-70 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00257 05 1917151 1919786 Tsu05g00257 05 1917151 1919786 ECH
Tsu05g00257 05 1917151 1919786 Tsu02g00429 02 3592453 3597614 PCT