Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00256 ATGGGTCATCATTCATGCTGCAATCAACAAAAGGTTAAAAGAGGGCTTTGGTCACCTGAGGAAGATGAGAAACTCATCAGATATATTACAACTCATGGTTATGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGACTACAAAGGTGTGGTAAGAGTTGTAGGTTAAGATGGATTAATTATTTAAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTCCATGGGGTTGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGTAGAACGGACAAcgaaataaaaaactattggaATTCATggatcaaaaagaaaattagaaagtcttcttcttcatctattAATTCATCAATCAATGTACCAAGTgttgatcatcatcatcatcctcctcAGTTCAATTACAATTCCAATCAACTAGATAATTATTTCACCAACCATGAAaatgcaacaacaacaaaagaaaccTTATTTTCTTCAACATGTCCTTTATTTATGTTTGACACAAGTTCACTACATGAAACAACATCAACAATAGACACCAATGTAATAAGACCAGAAGTACTGTTTCATGATACTATGAGTTTGAGTTCTGAAACATGGAACTtgaataatcatcatcatcaagttCAGGCACTTCCTCCTCATTCTGCATCAACGGCTTTTACCGGAACCATTCATGATTATAATCTACCACCATTGATAGAGAATAATGTGGAAAACATAATGCAATCTTGTAATATGGATGAGGAAGGAGGAGAGATATTAACATTGGAATCCATGCAAAGACAAGAGTTGAATGAATATTGGGTGGAaaatcaacagcaacaacaatgTCCTAGCTTTATTTTCAGCTGGGAGAGTGTTGAAAGACAAATTGGAGGTGATGATCAAGAACAAGTACTAaTCATTTCAGAGAAGAACCGTAGAGAGATCTCCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCAAAGAAGGATTACAATTTGGCTAAGCATCCTGAGATTGATGTTCCAAATCTGCAAGTGATTAAGCTTATGCAGAGCTTCAAATCTAGGGAATATGTTAGGGAAACTTTTGCTTGGATGCACTATTACTGGTTTTTGACCAATGATGGAATTGAGTTCCTTAGGACTTATCTCAATCTTCCATCTGAGATTGTTCCTGCTACTTTGAAGAAGCAGGCTAAGCCAGCTGGAAGGCCATTTGGCGGTCCACCTGGTGATCGTCCTAGGGGTCCACCTAGATTTGAAGGTGAAAGAAGATTCGGTGATCGTGATGGATACCGTGGAGGTCCCAGAGGACCTGGTGGTGAATTTGGAGGAGAGAAAGGCGGAGCACCAGCTGACTACAGACCTTCCTTTGGGGGTCCTGGAGGTAGACCTGGCTTCGGTCGTGGTTCTGGTGGTTATGGAGCACCAACTAGTTCAAATGATGCTTAA 1470 0.368 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSSSINSSINVPSVDHHHHPPQFNYNSNQLDNYFTNHENATTTKETLFSSTCPLFMFDTSSLHETTSTIDTNVIRPEVLFHDTMSLSSETWNLNNHHHQVQALPPHSASTAFTGTIHDYNLPPLIENNVENIMQSCNMDEEGGEILTLESMQRQELNEYWVENQQQQQCPSFIFSWESVERQIGGDDQEQVLIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGEFGGEKGGAPADYRPSFGGPGGRPGFGRGSGGYGAPTSSNDA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00256 489 MobiDBLite consensus disorder prediction 422 438 - -
Tsu05g00256 489 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu05g00256 489 CDD SANT 17 61 IPR001005 -
Tsu05g00256 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu05g00256 489 Pfam Plectin/S10 domain 313 404 IPR005326 -
Tsu05g00256 489 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 236 487 - -
Tsu05g00256 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu05g00256 489 CDD SANT 69 111 IPR001005 -
Tsu05g00256 489 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu05g00256 489 MobiDBLite consensus disorder prediction 401 489 - -
Tsu05g00256 489 Gene3D - 6 66 - -
Tsu05g00256 489 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu05g00256 489 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu05g00256 489 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu05g00256 489 Gene3D - 311 414 IPR036388 -
Tsu05g00256 489 SMART sant 66 114 IPR001005 -
Tsu05g00256 489 SMART sant 13 63 IPR001005 -
Tsu05g00256 489 Gene3D - 68 136 - -
Tsu05g00256 489 PANTHER 40S RIBOSOMAL PROTEIN S10 236 487 IPR037447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00256 Tsu-Chr5 1907500 1914123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00256 1 304 MYB Transcription Factor Family AT1G63910 50.716 1.43e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g00256 S10_plectin 1.2e-41 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00256 K09422 K02947 gmx:100803556 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00256 05 1907500 1914123 Tsu05g00256 05 1907500 1914123 ECH
Tsu05g00256 05 1907500 1914123 Tsu02g00428 02 3589013 3591016 PCT