Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00252 ATGGCTCAAGAATTTGAGAACAAAGCCAAAGAAGCTTTCTTCGACGACGATTTTACTCTCGCCGTTGATCTCTACTCGCAAGCTATCGATTTGGATCCTAATAACCCTAATCTCTTCGCCGATAGAGCACAAGCTTATATCAAACTCAACTCTTTTACTGAAGCTGTTTCTGATGCTAATAAGGCTATTTTGTTAAACCCTACTTTATCTAAAGCTTATCTTAGAAAAGGGACTGCTTGTTTTAATCTTGAAGAATATCATACTGCTAAGGTTGCACTTGAAAAGGGTGCTTCTTTTGCACCTAATGATTCCAGATTTACTAATTTGATTCAACAATGTCAACGCCACATTGCTGCTgAGGAATCAGATAGTCTTGTTGGCATCTTGCCACCAAATGGAACCAAAACATCTGTACCGCCTGTTGCTGCTGATACCCATATGTGTGATACAAGTGATGGAACATCCAAAGAACCTCAAAGAGACATTCCTGCTCCCCAAACTAATGAAGCTGCGCCAATCAGACCAAAATACAGACATGAGTATTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATACCAGCAGAAAATGTGGCTGTGGAGTTTGGTGAACAAATTCTGAGTGTTACCATTAATGTTCCTGGTCAAGATGCCTATCAATATCAACCTCGATTGTTTGGAAAGATAATACCTGATAAGTGCAAAGTTGTGGTGTTGTCGACCAAAATTGAAATACGTCTGGCAAAAGCTGAAATTCTTAACTGGGCATCTCTGGAATATAGCAAGGATGTGGTTCCTCAAAAGATAAATGTGCCTACAATTCTATCTGAAAGGCCTGCATATCCATCATCAAAGTCGAGGACTAAGGATTGGGATAAGCTAGAAGCTGAAGTGAAAAAAGAGgagaaagaagaaaagcTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAGTGCAGATGAGGACATGAGGAGAGCGATGAGCAAGTCTTTTCAAGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGAAGTCCTCCAGAAGGCATGGAGGTGAAGAAATGGGAATATTGA 1128 0.3954 MAQEFENKAKEAFFDDDFTLAVDLYSQAIDLDPNNPNLFADRAQAYIKLNSFTEAVSDANKAILLNPTLSKAYLRKGTACFNLEEYHTAKVALEKGASFAPNDSRFTNLIQQCQRHIAAEESDSLVGILPPNGTKTSVPPVAADTHMCDTSDGTSKEPQRDIPAPQTNEAAPIRPKYRHEYYQKPEEVVVTIFAKGIPAENVAVEFGEQILSVTINVPGQDAYQYQPRLFGKIIPDKCKVVVLSTKIEIRLAKAEILNWASLEYSKDVVPQKINVPTILSERPAYPSSKSRTKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQSADEDMRRAMSKSFQESNGTVLSTDWKEVGSKKVEGSPPEGMEVKKWEY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00252 375 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Tsu05g00252 375 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Tsu05g00252 375 Gene3D - 175 266 IPR008978 -
Tsu05g00252 375 Pfam Tetratricopeptide repeat 17 56 - -
Tsu05g00252 375 PANTHER PROTEIN SGT1 HOMOLOG A 1 375 - -
Tsu05g00252 375 ProSiteProfiles SGS domain profile. 284 375 IPR007699 -
Tsu05g00252 375 Pfam SGS domain 293 373 IPR007699 -
Tsu05g00252 375 PANTHER PROTEIN SGT1 HOMOLOG 1 375 IPR044563 GO:0051087
Tsu05g00252 375 SUPERFAMILY HSP20-like chaperones 168 271 IPR008978 -
Tsu05g00252 375 CDD p23_CS_SGT1_like 180 263 - -
Tsu05g00252 375 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Tsu05g00252 375 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Tsu05g00252 375 ProSiteProfiles CS domain profile. 174 263 IPR007052 -
Tsu05g00252 375 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Tsu05g00252 375 MobiDBLite consensus disorder prediction 148 170 - -
Tsu05g00252 375 MobiDBLite consensus disorder prediction 355 375 - -
Tsu05g00252 375 Pfam CS domain 178 253 IPR007052 -
Tsu05g00252 375 SMART tpr_5 36 69 IPR019734 GO:0005515
Tsu05g00252 375 SMART tpr_5 2 35 IPR019734 GO:0005515
Tsu05g00252 375 SMART tpr_5 70 103 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00252 Tsu-Chr5 1864517 1869307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00252 1 86 U-box Gene Family AT3G07370 31.395 2.83e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00252 K12795 - gmx:100784022 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00252 05 1864517 1869307 Tsu05g00252 05 1864517 1869307 ECH