Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00246 ATGGGAAATCGCATCAGTTCCAAATTCTCTTCCAATAACCAAACCcattcaaaacaacaacaacaaactccACATTCAAAATCAGAACCCTCACATCCCACTCCATCTTCCGTTCACAATCAACCCTTCCACTCCcactcctcctcctcctcctcctcttccGCCCCCGTTGGCCGTGTCTTAGGCAAACCCATGGAAGATGTCCGATCTACCTACACCTTCGGTCGTGAACTAGGTCGTGGTCAATTCGGAGTCACATATCTAGTAACTCACAAAATCACCAAAGAACAATTCGCCTGTAAATCGATCGCGACAAGGAAGCTCATTCGTCGCGATGATTTGGATGATATTCGCCGTGAAGTTCAGATCATGCATCATCTCACCGGTCACCGGAATATTGTTGAGCTTAAAGGTGCTTATGAGGATCGTCATTCTGTTAACCTTATTATGGAGCTTTGTGCTGGAGGTGAACTATTTGATCGGATTATATCTAAAGGCCATTACTCCGAGCGTGCTGCGGCTGAATTGTGTCGCCAGATGGTGGCTGTTGTTCATAATTGTCACACTATGGGTGTTATGCATAGAGATTTGAAGCCGGAGAATTTCTTGTTTCTTAGTAAGCATGAGAATTCGCCGCTTAAAGCCACCGATTTCGGTCTCTCCGTGTTTTTCAAGCCAGGAGATGTATTTAAAGATCTTGTTGGAAGTGCATATTATGTTGCTCCTGAGGTGTTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCTGGGATTATTTTGTATATTCTCCTCTCTGGTGTTCCTCCCTTCTGGGCAGaaaatgaaaagggtATCTTTGATGCTATTCTTCACGGACATATTGATTTTGCATCCGAGCCCTGGCCTAAAATATCAAGTAGTGCTAAAGATCTGATCAAGAAGATGTTGCAAGGTGACCCTAAAGAACGAATTTCGGCTGTTGACGTTCTTAATCATCCTTGGATGAAAGAAGATGGAGCATCCGATAAGCCTCTTGATATTGCCGTTTTAACCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAAAAAGTAGCTCTGAAGGTTATTGCTGAAAatctttctgaagaagaaattATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAGTGGAACAATCACTTTCGAAGAGTTGAAAGCTGGCCTCCCCAAACTAGGTACTAAGATTTCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGTAAGATTTCTTTTACAAACCATTCTTATCTGTTACAACTGA 1299 0.4003 MGNRISSKFSSNNQTHSKQQQQTPHSKSEPSHPTPSSVHNQPFHSHSSSSSSSSAPVGRVLGKPMEDVRSTYTFGRELGRGQFGVTYLVTHKITKEQFACKSIATRKLIRRDDLDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAAELCRQMVAVVHNCHTMGVMHRDLKPENFLFLSKHENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGIILYILLSGVPPFWAENEKGIFDAILHGHIDFASEPWPKISSSAKDLIKKMLQGDPKERISAVDVLNHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAVRFLLQTILICYN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00246 432 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Tsu05g00246 432 MobiDBLite consensus disorder prediction 1 57 - -
Tsu05g00246 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Tsu05g00246 432 Gene3D - 338 422 - -
Tsu05g00246 432 SMART efh_1 376 404 IPR002048 GO:0005509
Tsu05g00246 432 ProSiteProfiles Protein kinase domain profile. 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00246 432 MobiDBLite consensus disorder prediction 1 60 - -
Tsu05g00246 432 CDD STKc_CAMK 72 329 - -
Tsu05g00246 432 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Tsu05g00246 432 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00246 432 Pfam EF hand 377 403 IPR002048 GO:0005509
Tsu05g00246 432 SMART serkin_6 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00246 432 SUPERFAMILY EF-hand 355 420 IPR011992 -
Tsu05g00246 432 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 420 - -
Tsu05g00246 432 Gene3D Transferase(Phosphotransferase) domain 1 158 337 - -
Tsu05g00246 432 CDD EFh 377 420 IPR002048 GO:0005509
Tsu05g00246 432 Gene3D Phosphorylase Kinase; domain 1 74 157 - -
Tsu05g00246 432 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 28 420 - -
Tsu05g00246 432 SUPERFAMILY Protein kinase-like (PK-like) 69 341 IPR011009 -
Tsu05g00246 432 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00246 Tsu-Chr5 1803861 1808612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00246 58 419 EF-hand Containing Proteins AT4G23650 81.818 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu05g00246 Pkinase 3.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00246 K13412 - gmx:100808536 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00246 05 1803861 1808612 Tsu05g00246 05 1803861 1808612 ECH
Tsu05g00246 05 1803861 1808612 Tsu02g00405 02 3389380 3393934 PCT