Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00237 ATGGGtcattttctgttttcattttaCTTGATTGGTTTGTTAGTGTATCAAGGAAATGCAGAACCTGTTGAAGATAAGAAAGCATTGTTAgaatttgttgaaaaattaCAACCTTTTAGGCCTTTGAATTGGAATTTGAGTTCATCAATTTGTACTAGTTGGAATGGTGTAACTTGTAGTCAAGATCAGTCGCAAATTATCGCGATTCGATTACCGGGAGTTGGATTTAATGGCACAATACCTCCTAATACAATTAGTAGAATTAAAGGGTTGCAAAAATTGAGTCTTAGATCCAATTTTATAACTGGTCATTTTCCTTATGATTTTATCAATTTAAAgaatctttcttttctttatcttcAATTCAATAATTTCATTGGTCCTTTGCCTGATTTTGCTGTTTGGAACAATCTTTCTGTTGTTAATTTGTCTAATAACCGTTTCATTGGCGAAATTCCTTTATCTCTTTCCAATTTGAGTCACCTTGCTTGTTTGAATCTTGCAAACAACTCGCTTTCGGGTGAAATTCCTAATATAAACTTGCCTTTGttgcaaaaattgaatttgtCTAATAATAATTTACAAGGGGTTGTTCCTGTTTCTCTTCAGAGGTTTCCTAAGTCAGCATTTATTGGAAACAATGTTTCTATTAGTACACTTTCTCCGTGTTCGGAACATTGTTCTAAATCTAAGAAACATGGAAGGATTGGTGGAACATTAGCGTTGGGAATTATTGTTGTTGGTGCTTTTATATGCTTTGCAGCACTGGTTGTTTTTACCTTTGTTTTGTGTtctaaaaagaaagataaagatGCTTTTGTTGGCAAGTTAGAGAAAGGAGGAAAAATGTCACCTGAAAAAGTTGTCTCAAGAAACCAAGATGCAAACAATAAGCTTTTTTTCTTTGAGGGATGTAACTATAACTATGCTTTTGATTTGGAGGATTTATTAAGGGCTTCTGCTGAGGTGCTCGGTAAGGGAACATTTGGTGCTGCATACAAGGCAGTACTAGAAGATGCAACCACGGTTGTCGTCAAGAGGCTAAAAGAGGTAGCTGTTGGAAAGAAGGATTTTGAGCAACATATGAATATTGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGCTAAAGGCATATTACTATTCCAAAGATGAGAAACTTGTTGTATATGACTACTACAGTCAGGGTAGCATCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAAGGTGGCTTTAGATTGGAATACTCGGATCAAAATAGCATTAGGTGCTGCACAAGGCCTTGCTTGTATCCATTCTGAGAATGGTGGGAAACTTGTACATGGCAATGTCAAATCCTCTAATATCTTTCTCAATACTAAACAGTGTGGTTGTATATCTGATCTTGGCCTAGCAACCATAATGAGTTCAGTCACCCAGCCCATCTCACGAGCAGCCGGTTATCGAGCACCTGAAGTTACAGACACCAGGAAAGCAACACAGGCTTCAGATGTTTACAGCTTTGGCGTGGTGTTACTAGAGCTTCTAACTGGGAAATCCCCTATCCACACAACTAGAGGCGATGAGATTGTCCACCTTGTGAGATGGGTTCATTCAGTTGTGAGAGAGGAATGGACTGCTGAAGTATTCGACATAGAGCTTATGAGATGTCCTAATATAGAAGAAGAGATGGTAGAGATGTTACAGATAGCGATGTCATGTGTTGCAAGGATGCATGATCAAAGACCTAAGATGTCAGAAATCGTAAAGATGATAGAAAATGTAAGGCAGATAGATATAGAGAATCAGCCATCATCTGAGAACCAAGCTGAAAGTGCAACACAACATAACATCCCTCAACTTGATAGTCCACTCTCTACCGTAGAAGGAGGTGAATGA 1881 0.3658 MGHFLFSFYLIGLLVYQGNAEPVEDKKALLEFVEKLQPFRPLNWNLSSSICTSWNGVTCSQDQSQIIAIRLPGVGFNGTIPPNTISRIKGLQKLSLRSNFITGHFPYDFINLKNLSFLYLQFNNFIGPLPDFAVWNNLSVVNLSNNRFIGEIPLSLSNLSHLACLNLANNSLSGEIPNINLPLLQKLNLSNNNLQGVVPVSLQRFPKSAFIGNNVSISTLSPCSEHCSKSKKHGRIGGTLALGIIVVGAFICFAALVVFTFVLCSKKKDKDAFVGKLEKGGKMSPEKVVSRNQDANNKLFFFEGCNYNYAFDLEDLLRASAEVLGKGTFGAAYKAVLEDATTVVVKRLKEVAVGKKDFEQHMNIVGSLKHENVVELKAYYYSKDEKLVVYDYYSQGSISALLHGKRGEDKVALDWNTRIKIALGAAQGLACIHSENGGKLVHGNVKSSNIFLNTKQCGCISDLGLATIMSSVTQPISRAAGYRAPEVTDTRKATQASDVYSFGVVLLELLTGKSPIHTTRGDEIVHLVRWVHSVVREEWTAEVFDIELMRCPNIEEEMVEMLQIAMSCVARMHDQRPKMSEIVKMIENVRQIDIENQPSSENQAESATQHNIPQLDSPLSTVEGGE 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00237 626 Gene3D Phosphorylase Kinase; domain 1 285 392 - -
Tsu05g00237 626 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Tsu05g00237 626 MobiDBLite consensus disorder prediction 598 618 - -
Tsu05g00237 626 Pfam Protein tyrosine and serine/threonine kinase 322 585 IPR001245 GO:0004672|GO:0006468
Tsu05g00237 626 SUPERFAMILY L domain-like 38 207 - -
Tsu05g00237 626 ProSiteProfiles Protein kinase domain profile. 318 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00237 626 SUPERFAMILY Protein kinase-like (PK-like) 322 586 IPR011009 -
Tsu05g00237 626 MobiDBLite consensus disorder prediction 598 626 - -
Tsu05g00237 626 Gene3D Ribonuclease Inhibitor 135 228 IPR032675 -
Tsu05g00237 626 PANTHER OS05G0588300 PROTEIN 19 602 - -
Tsu05g00237 626 Gene3D Transferase(Phosphotransferase) domain 1 394 613 - -
Tsu05g00237 626 Gene3D Ribonuclease Inhibitor 24 134 IPR032675 -
Tsu05g00237 626 ProSitePatterns Protein kinases ATP-binding region signature. 324 355 IPR017441 GO:0005524
Tsu05g00237 626 PANTHER PROTEIN, PUTATIVE-RELATED 19 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00237 Tsu-Chr5 1741568 1745020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00237 14 613 Receptor kinase-like Gene Family AT4G23740 61.452 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu05g00237 PK_Tyr_Ser-Thr 2.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00237 - - gmx:100804799 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00237 05 1741568 1745020 Tsu05g00237 05 1741568 1745020 ECH
Tsu05g00237 05 1741568 1745020 Tsu02g00394 02 3250375 3254453 PCT