Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00236 ATGACCAAGAAACACACTCACCGACTCAACCTTACTAAAGAAAACACTCCAAAAGAACCATTTCCAAAAATAGTTAGAATAACTGTAACAGACAAAGACGCTACAGATTGTTCAAGCGACGAAGGAGAACAACGTTTCAAGCCTAACCGACTTAAAAAGTTTGTTAACGAGATTATCATAGAGCCATGCGTACCTGAGAATAACAACAACCGCGGCagtggaggtggtggtggtgtttcTAGGAAGAGAAACAGGACAAACGGCGGAGGAGGAAAAGCAAGAGCTCCGGTGAGTCGACAGGTTTACTCCGGGAAGAAATACAGAGGAGTTAGACAACGGCCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCGTCGCGTGGAGTGCGCGTGTGGCTTGGCACGTTTGAAACTGCTGAAGAAGCTGCTATTGTGTACGATAACGCGGCTATTAAGTTGCGCGGACCAGACGCGCTAACTAATTTTATAACTCCACCCTCCACGTGTCAGTTATCATCACCGGATAACGAAAAACCTCCTCAGCAGTTACCGTTACCGGTAACAAACTCCGGCTACATTTCCGGCGAAGAATCTCAATCACAGTCACAATCTCATTCTCAAActcaaaacaacaataaaagtttGTTTTCACCTAAATCAGTTCTTCATCCTTGTTCATCTTCAGAAGAAGTAGCTGAATCTGAGTCACTATTTTCAATTCCAAGtgatatattatttgattttcagGATTCTTCTTCACCGGCGAATGATGCATTTAACAGTTTCAACAGCTTCAACACATTACCGGAGAATATCTTCTACGCCGATGTTGATTGTTCGGAGTATTTCGATTTCGGTTTGGAAAGTTTGCATACACATAAGGATGAAGACTTTTTTCAAGATATTGATGATTTGTTTGCTTCAGATGCTCTTCTtgcactttaa 945 0.4011 MTKKHTHRLNLTKENTPKEPFPKIVRITVTDKDATDCSSDEGEQRFKPNRLKKFVNEIIIEPCVPENNNNRGSGGGGGVSRKRNRTNGGGGKARAPVSRQVYSGKKYRGVRQRPWGKWAAEIRDPSRGVRVWLGTFETAEEAAIVYDNAAIKLRGPDALTNFITPPSTCQLSSPDNEKPPQQLPLPVTNSGYISGEESQSQSQSHSQTQNNNKSLFSPKSVLHPCSSSEEVAESESLFSIPSDILFDFQDSSSPANDAFNSFNSFNTLPENIFYADVDCSEYFDFGLESLHTHKDEDFFQDIDDLFASDALLAL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00236 314 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Tsu05g00236 314 MobiDBLite consensus disorder prediction 164 213 - -
Tsu05g00236 314 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Tsu05g00236 314 MobiDBLite consensus disorder prediction 64 97 - -
Tsu05g00236 314 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Tsu05g00236 314 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Tsu05g00236 314 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Tsu05g00236 314 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Tsu05g00236 314 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Tsu05g00236 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 4 310 - -
Tsu05g00236 314 MobiDBLite consensus disorder prediction 1 23 - -
Tsu05g00236 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 310 - -
Tsu05g00236 314 SUPERFAMILY DNA-binding domain 106 162 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00236 Tsu-Chr5 1729903 1731363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00236 1 313 AP2-EREBP Transcription Factor Family AT4G27950 36.286 8.78e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g00236 AP2 9.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00236 - - mtr:MTR_5g009620 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00236 05 1729903 1731363 Tsu05g00236 05 1729903 1731363 ECH
Tsu05g00236 05 1729903 1731363 Tsu02g00393 02 3245038 3245907 PCT