Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00228 atgGAAGAAAGTCCCCAAAATAAGGCAAAGATCTCCTCAAACTCAAGTAAAACTACTTCTGAAGAAGTAAGCAGCAGTGAGTGGGATTTCATAGAGATGAGTGAACAAGAGCAGGATCTCATTTACAGGATGTATGGCCTTGTCGGGGATAGGTGGAATTTGATAGCAGGCCGCATTCCTGGACGGAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACATGGTGATGCTTTTTCTGCCAAAAGAAGTGAAAGTAAAGCAAATTAA 270 0.4074 MEESPQNKAKISSNSSKTTSEEVSSSEWDFIEMSEQEQDLIYRMYGLVGDRWNLIAGRIPGRKAEEIERFWIMRHGDAFSAKRSESKAN 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00228 89 CDD SANT 32 71 IPR001005 -
Tsu05g00228 89 Pfam Myb-like DNA-binding domain 33 72 IPR001005 -
Tsu05g00228 89 SUPERFAMILY Homeodomain-like 34 72 IPR009057 -
Tsu05g00228 89 SMART sant 29 77 IPR001005 -
Tsu05g00228 89 Gene3D - 33 89 - -
Tsu05g00228 89 MobiDBLite consensus disorder prediction 7 29 - -
Tsu05g00228 89 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 13 86 - -
Tsu05g00228 89 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 13 86 - -
Tsu05g00228 89 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00228 Tsu-Chr5 1671582 1673509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00228 33 71 MYB Transcription Factor Family AT5G52600 61.538 4.89e-13 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu05g00228 Myb_DNA-binding 2.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00228 K09422 - tcc:18606675 129.028